Proposal summaries
B2126 - Nutrition and conduct problems The role of environmental risks and DNA methylation - 19/12/2013
Aim 1. Does poor prenatal nutrition (i.e., macronutrients, micronutrients and/or omega 3 fatty acids) impact with DNA methylation at birth, and does continued poor nutrition impact DNA methylation in childhood?
Aim 2. Is the relationship between prenatal poor nutrition and early onset conduct problems greater for those children whose mothers were stressed and depressed?
Aim 3. Is the relationship between nutrition, the key risk factors and an early onset of conduct problems partially explained by DNA methylation?
Aim 4. Use of whole genome-wide epigenetic approaches to identify developmental inter-relationships beween maternal depression and unhealthy nutrition in the prenatal and postnatal periods.
Aim 5. Use of conventional Mendelian Randomization to assess causal relationships between nutrition factors (prenatal and postnatal) and the early onset of conduct problems.
B2125 - Is maternal perinatal depression associated with psychotic-like symptoms PLIKS in late adolescence - 12/12/2013
Background
There is some evidence to suggest that adverse perinatal maternal life events are related to an increased risk of psychosis in offspring. There is, however, limited evidence linking maternal perinatal depression with future risk of psychosis in offspring. The only three studies identified investigate the same birth cohort and yield unclear results (Maki, Riekki et al., Jones et al., Maki et al.). In addition, maternal depression was not assessed using any standardised measure.
Maternal perinatal depression may influence the risk of psychosis in offspring via an effect on foetal development in utero as well as by exerting an environmental influence during infancy. Schizophrenia is considered to be a neurodevelopmental disorder and if there were an association between maternal perinatal depression and schizophrenia it would support a neurodevelopmental perspective.
Investigation of this possible association is important due to the relatively frequent occurrence of perinatal depression and the potential for intervention. Adolescents who report psychotic experiences may be at increased risk of developing a psychotic disorder therefore study of this group may yield important information regarding early life risk factors for psychotic disorders.
Maternal cognitive style is thought to be associated with depression in adolescent offspring. Such cogntive styles may also be related to offspring psychotic experiences and would again offer a potential target for intervention in those at hgh risk of psychotic disorder.
Objective
The primary objective of this study is to establish whether there is an association between maternal perinatal depression and the development of psychotic experience in their offspring during late adolescence.
Hypothesis
Our hypothesis is that maternal perinatal depression is associated with an increased of psychotic experiences in offspring in late adolescence.
Maternal perinatal depression may influence risk of psychosis in offspring through a number of interlinked mechanisms acting both during the intra-uterine period and during early childhood. In order to explore the mechanisms the association between paternal perinatal depression and adolescent psychotic experience will also be explored.
B2124 - Genetic predictors of attrition - 05/12/2013
Aim: The aim of this study was to determine whether genetic risk from common genetic risk variants for schizophrenia and ADHD, based on large, case-control genome-wide association studies could predict non-return of questionnaire data by children and parents, as well as non-attendance at clinic for data collection.
B2123 - Gender differences in parent-reported child health - 05/12/2013
Aims
To examine gender differences in carer reported child health from ages 5 to 16 (age range varies depending on item).
B2122 - Identification of genetic risk factors and assessing causality of modifiable exposures in adolescent depression - 05/12/2013
Objectives:
1) To detect genetic variants reliably associated with depression in adolescents via genome-wide association approaches in the ALSPAC and TEDS cohorts
2) To identify observational associations between depression and modifiable risk factors using the Mendelian randomization approach
3) To investigate the association between depression and patterns in DNA methylation
Given the paucity of significant findings concerning depression, our first aim will be to investigate the genetic architecture of, and potentially identify genetic variants reliably associated with, depression in adolescents via a combination of genome-wide approaches within both the ALSPAC and TEDS cohorts.
The second aim will be to use genetic instruments to investigate causality in associations between modifiable or environmental risk factors and depression. First, literature searches will be used to identify important observational or proposed environmental exposures for depression. Several of these, such as vitamin D, glycaemic traits, inflammation and physical activity, are available in ALSPAC. Observational associations will be calculated and, for those modifiable risk factors with suitable genetic instruments, MR will be applied to determine whether the association is causal. The ARIES data will be used to investigate associations between exposure to maternal depression and patterns of methylation throughout early development. In particular, we aim to investigate whether early life stress events, such as antenatal and postnatal depression, have an effect on methylation patterns in the offspring. Independent associations between adolescent depression and both antenatal and postnatal depression have previously been shown, which appear to involve different mechanisms. We propose to explore whether this is mediated through DNA methylation.
B2121 - Aid SAM project Antibiotics influence on obesity and cardio-metabolic disease - Sustainability of healthy Microbiome - 05/12/2013
Aim:
The Aid SAM project will examine associations between specific antibiotic treatments given to mothers during pregnancy (and lactation) and overweight/obesity in childhood as well as specific antibiotics given to children during early infancy (0-6 months) and overweight/obesity in childhood and later life. The three main cohorts we will use to investigate this is the Danish National Birth Cohort (DNBC), the Nothern Finland Birth Cohort (NFBC) and the Alspac cohort. Furthermore, an adult Danish population will be used to identify possible associations between antibiotics and CVD in adults through a data-driven approach. This approach may further help to identify the most interesting subtypes and combinations of antibiotics. The plan is to start of with analyses in the DNBC and then replicate analyses/interesting findings in the NFBC and ALSPAC. This approach gives more power to findings, which otherwise could be surpressed by/if multiple testing correction are applied. Findings will be dissiminated either in one or several publications, with possibility of back to back publication. The main applicant will perform analyses, but possible data-driven analyses will be performed by AB Jensen, bio-informatitician from Soren Brunaks Group. In addition other collaborators from Bristol in addition to George D Smith could come into play
B2104 - Associations between one-carbon pathway metabolite measures genetic and epigenetic variation within ALSPAC - 05/12/2013
B2120 - Investigation of parent of origin effects in relation to DNA methylation - 05/12/2013
Aim:
1) identify novel parent of origin variants in relation to DNA methylation in ALSPAC;
2) investigate the effects of known/established parent of origin variants (related to common disease) in relation to DNA methylation in ALSPAC;
3) Investigate the relationship between genotype, methylation and phenotype to better understand parent-of-origin effects on phenotype.
B2119 - Investigation of white blood cell counts/proportions in relation to DNA methylation - 05/12/2013
Aim:
Investigate the potential associations between established WCC genetic variants in relation to white blood cell counts/phenotypes and DNA methylation within ALSPAC.
B2115 - Negative outcome control study of breast feeding - 28/11/2013
I am currently writing a book chapter and paper about different causal methods and using breast feeding with different outcomes as an illustrative example (largely using published work, including some publications that have used ALSPAC data). I would like to include as an e.g. a negative outcome control study i.e. a study in which I would look at the association of breast feeding with an outcome that biologically it would not be expected to affect (but might be associated with via confounding).
ALSPAC has questions on whether the family home had ever been invaded by rats, dogs, cats, mice, cockroaches, pigeons, woodlice etc. (see picture attached with this email) which would be ideal as negative controls.
In both the book chapter and paper these analyses would be a small part of the whole document
I would look at the simple association of breast feeding with one or more of the 'animal/insect home invasion' responses - depending on how common they are in the cohort.
B2114 - The role of environment and executive function in the social patterning of health-related behaviours - 28/11/2013
Aim:
To assess the extent to which effects of environment on health-related behaviour are attenuated by executive function. In particular, to assess whether high executive function (in particular, response inhibition) negates the impact of exposure to environments that are more likely to promote less healthy choices.
Four health-related behaviours - diet, physical activity, smoking and alcohol consumption - will be explored, using measures taken between the ages of 10 and 15.
B2113 - Maternal pre-eclampsia and bone mineral density of the adult offspring - 28/11/2013
Aim: To assess bone mineral density (BMD) and bone mineral content (BMC) of offspring born from a preeclamptic pregnancy.
Hypothesis: We hypothesise, based on the limited available evidence on this topic, that offspring who were 'exposed' to preeclampsia will have a higher bone mineral density than those who were not exposed.
Exposure variables: Preeclampsia and gestational hypertension
Outcome variables: Bone mineral density and content (as measured by DXA and pQCT)
Confounding/mediator variables: SES, maternal smoking, maternal BMI, maternal ethnicity, maternal age, maternal alcohol consumption, maternal physical activity, maternal vitamin D & Calcium intake, offspring weight/height, offspring total body fat mass/lean mass, CTX, Insulin, parity, birthweight, gestational age.
Summary:
Preeclampsia is the leading cause of perinatal and maternal mortality and morbiditiy and effects around 3% of all pregnancies worldwide. The only current cure is the delivery of the placenta and thus often results in an iatrogenic preterm delivery. The fetus has the greatest demand for calcium during the third trimester, so consequently a preterm delivery can result in insufficient bone mineralization (Weiler et al. 2002). A recent study has suggested that in pregnancies compliated by preeclampsia additional mechanisms may exist which result in protective effects on long term bone health in the offspring, both in preterm and term births (Miettola et al. 2013). However, this study was limited by a small sample size and no maternal lifestyle information. This study warrants replicating with larger numbers and more comprehensive confounder adjustment.
We hope to use the ALSPAC data to explore the association between preeclampsia (and gestational hypertension) in term and preterm births with bone parameters from recently collected DXA and pQCT scan data.
References
Miettola S, Hovi P, Andersson S et al. Maternal preeclampsia and bone mineral density of the adult offspring. Obstetrics. Am J Obstet Gynecol 2013;20:443.e1-10
Weiler HA, Yuen CK, Seshia MM. Growth and bone mineralization of young adults weighing less than 1500g at birth. Early Hum Dev. 2001; 67: 101-12
B2112 - Exploring the fetal insulin hypothesis in ALSPAC - 28/11/2013
Aims
1) To investigate associations between offspring birthweight and offspring fasting glucose/insulin at birth, age 8.5 years, 15 years and 17 years.
2) To investigate associations between offspring birthweight allele score (known variants and genome wide prediction), birthweight and offspring fasting glucose/insulin
3) To investigate associations between offspring birthweight allele score (known variants and genome wide prediction), birthweight and offspring fasting glucose/insulin - with adjustment for maternal genotype to remove negative confounding.
4) To investigate associations between maternal birthweight and maternal fasting glucose/insulin in FOM1 clinic
5) To investigate associations between maternal birthweight allele score, birthweight and maternal fasting glucose/insulin
6) To investigate associations between offspring glucose/insulin allele score and offspring birthweight
7) To investigate the timing of effect of individual glucose/insulin variants
8) Bivariate GCTA of offspring birthweight and offspring glucose/insulin.
B2111 - Identification of patterns of methylation associated with age at menarche - 28/11/2013
Aims:
1) To identify differentially methylated regions (DMRs) that are associated with age at menarche. This will be tested in both ALSPAC mothers using recalled age at menarche, and in young participants using DNA methylation measured at 15-17 years and age at menarche reported at the 21/22 year visit.
2) To explore whether identified DMRs are already apparent at birth, or if they are established over the course of childhood and adolescence.
3) To understand how common genetic variation underlies differences in methylation relating to menarche timing.
B2110 - DIETARY PATTERNS IN PREGNANCY AND OFFSPRING GROWTH OUTCOMES A MULTI-COUNTRY ANALYSIS OF BIRTH COHORTS - 28/11/2013
Aims:
1) Characterise dietary patterns in pregnancy using data from English and Danish birth cohorts.
2) Compare dietary patterns between pregnant women living in England and Denmark.
3) Examine the relationship between maternal dietary patterns in pregnancy and size at birth.
4) Examine the relationship between maternal dietary patterns in pregnancy and offspring growth at year 7, 1 and 6 months.
5) Assess the relationship of change in maternal dietary patterns and childhood adiposity measures.
B2118 - Use of ALSPAC to inform key questions for multiple therapeutic areas - 28/11/2013
Aims
This project aims to generate valuable information to prioritize obesity targets and will include:
a)Replication of genetic association with obesity related traits
b)Analysis of associations with lifestyle/biomarker/diet to generate mechanistic hypotheses.
B2117 - Investigating the causal effect of maternal obesity on pregnancy outcomes using Mendelian Randomization in ALSPAC - 28/11/2013
Aims
To perform Mendelian randomization analyses to investigate the causal effect of maternal pre-pregnancy BMI on a number of pregnancy outcomes using genetic variants combined in a weighted allelic score. Other related exposures including maternal waist-hip ratio, maternal glycaemia and fatty acid profile will also be considered in an Mendelian randomization framework.
B2116 - In utero exposure to heavy metals effects on child development - 28/11/2013
AIMS AND OBJECTIVES
The overall aims of the study are: (1) to identify the predictors of Pb, Cd and Hg levels in pregnancy with a view to providing advice and interventions that will minimise exposure at this vulnerable time; (2) to identify the predictive value of maternal levels in a variety of childhood outcomes up to the age of age 18 years. This will include a study of the effects of maternal genetics and epigenetics in modifying these relationships. All analyses will involves initial work in identifying and taking into account relevant confounders to determine the features of the mothers' backgrounds that are related to exposure to Pb, Cd or Hg exposure (e.g. age, educational levels, occupational exposure, smoking history, exposure to passive smoking, dietary components, etc.). Results will be presented as odds ratios or effect sizes with confidence intervals, and in unadjusted and adjusted models if appropriate. The complex causal analyses will be undertaken in consultation with Professor George Davey Smith (Professor of Clinical Epidemiology, University of Bristol).
B2109 - Depression at 17 THEME 3 CONTINUITIES AND DISCONTINUITIES - Depression and Fatigue part of previous Wellcome Trust application - 14/11/2013
Adolescent depression is highly comorbid with other disorders, including persistent fatigue or chronic fatigue syndrome. Teenage years are a key period of change and provide an opportunity to look at the continuities and discontinuities of psychopathology from a developmental perspective. Heterotypic continuities could arrise in a variety of ways: because the two disorders share common or correlated risk factors (genetic or environmental); because one disorder contributes, directly or indirectly, to risk for the other; or because the joint pattern constitutes a distinct diagnosis entity. ALSPAC has repeated measures of psychopathology. These analyses will investigate the relationship between depression and fatigue, the direction of causality and potential explanatory variables such as physical activity levels and early stressful life events. This study will examine the role of both parental teenagers, including maternal depression and early childhood depression. The study will further examine a range of hypotheses about premorbid risk markers for persistent fatigue including the role of personality, childhood adversity (material and emotional), socioeconomic and physical activity factors.
B2108 - Quantifying the harms and costs of passive drinking in the UK - 14/11/2013
The overall aim of this proposal is to address the MRC, ESRC and Alcohol Research UK: Call for Alcohol Misuse Research theme "Quantifying the harms to non-drinkers". Such secondary harms or harms from passive drinking refer to the indirect harm (e.g. cognitive, developmental, psychological, domestic violence, crime, injury, and loss of productivity) to others (e.g. foetus, child/ren, partner, and society) resulting from someone else's drinking. Therefore, the overall aim of this project is to quantify the social, psychological and economic costs to families from either one or both parents' alcohol consumption.
To determine the indirect harms of parental drinking on the child, the project will:
1) longitudinally quantify the indirect harms across the child's lifespan (from foetus to aged ) from parental drinking on neurodevelopment and educational attainment, psychological well-being and substance use for the child
2) consider whether there are sex differences in indirect harms experienced
3) determine the harm resulting from different patterns of drinking over time, and whether changes in alcohol consumption/patterns of drinking result in changes in the associated harm
4) determine protective factors (resilience)
5) determine the combined harm of alcohol and domestic violence
6) determine the associated economic costs of parental drinking on the child by examining service utilization
To determine the indirect harms of partner drinking on the other partner, the project will:
1) longitudinally quantify the indirect harms across the partner relationship on psychological well-being and substance use
2) consider whether there are differences in indirect harms experienced, depending on the sex and sexuality of the partners
3) determine the harm resulting from different patterns of drinking over time, and whether changes in alcohol consumption/patterns of drinking result in changes in the associated harm
4) determine protective factors (resilience)
5) determine the combined harm of alcohol and domestic violence
6) determine the associated economic costs of parental drinking on the child by examining service utilization.