Proposal summaries

These are research proposals that have been approved by the ALSPAC exec. The titles include a B number which identifies the proposal and the date on which the proposals received ALSPAC exec approval.

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B2382 - Defining the mitochondrial DNA genetic bottleneck by studying the inheritance of low-level heteroplasmy between mothers and offspring - 12/02/2015

B number: 
B2382
Principal applicant name: 
Dr Patrick Chinnery (Newcastle University, UK)
Co-applicants: 
Vasileios Floros (Newcastle University, UK)
Title of project: 
Defining the mitochondrial DNA genetic bottleneck by studying the inheritance of low-level heteroplasmy between mothers and offspring
Proposal summary: 

Our aim is to study low-level heteroplasmy in a large number of mother-child pairs using DNA samples already extracted for ALSPAC genotyping studies. We estimate that greater than 1000 pairs will be required to carry out a meaningful experiment, based on our pilot data from existing data sets. We will use ultra high depth next generation sequencing (IlluminaMiSeq) to carry out this experiment, allowing the detection of greater than 0.5% heteroplasmy from a standard genomic DNA sample. Statistical analysis will be carried out by Dr Ian Wilson at the Institute of Genetic Medicine. We will model the genetic bottleneck as done previously,7 and determine whether the background mtDNA sequence influences the rate of segregation of mtDNA heteroplasmy in healthy controls. We will then compare this to data acquired from humans transmitting pathogenic mtDNA mutations to determine whether they behave differently.8 This will advance our understanding of the underlying biology, and will be directly relevant to current work aimed at preventing the transmission of mtDNA mutations.

Date proposal received: 
Monday, 9 February, 2015
Date proposal approved: 
Thursday, 12 February, 2015
Keywords: 
Mitochondrial DNA
Primary keyword: 
Genetics

B2390 - A study of origins correlates and determinants of locus of control - 12/02/2015

B number: 
B2390
Principal applicant name: 
Prof Jean Golding (University of Bristol, UK)
Co-applicants: 
Prof Alan Emond (University of Bristol, UK), Prof Stephen Nowicki (Duke University, USA)
Title of project: 
A study of origins, correlates and determinants of locus of control
Proposal summary: 

Locus of control (LOC) refers to the connections individuals perceive between their behavior and what happens to them. If they perceive such connections they are internally controlled; but if they see their outcomes as due to luck, fate or chance they are externally controlled. Even though researchers have found an internal LOC to be related positively to important aspects of human life including academic achievement, business success, physical and mental health and, in a United Nations study of 84 countries, to happiness, little is known about how internal and external LOC develop, their stability over time or whether they can be changed. Such information is important because over the past 30 years the average locus of control score for adults and children has become more external. We need to know why, and how to change that negative trend. The data to be used in this project include measures of LOC of parents during pregnancy and 16 years later, and of their children at ages 8 and 18 on over 12000 families. It is the only large study in the world that includes multiple assessments of LOC for children and their parents linked to relevant outcome measures. Statistical analyses will provide crucial information on how to foster internality and hence develop interventions.

Date proposal received: 
Monday, 9 February, 2015
Date proposal approved: 
Thursday, 12 February, 2015
Keywords: 
Primary keyword: 
Locus Of Control

B2389 - Coventry Reading Engagement Self-Belief and Teaching Project - 12/02/2015

B number: 
B2389
Principal applicant name: 
Julie Mary Carroll (University of Warwick, UK)
Co-applicants: 
Professor Charles Hulme (UCL, Division of Psychiatry, UK), Prof Barbara Maughan (King's College London, UK)
Title of project: 
Coventry Reading, Engagement, Self-Belief and Teaching Project
Proposal summary: 

The aims of this project are to examine the links between attitudes, self-belief and literacy behaviour and attainments. It is likely that these factors form a reciprocal relationship - i.e. success at reading means that a child believes that they can do well at reading, and they are therefore motivated to a) try harder when decoding unknown words and b) read for pleasure. In turn, both of these activities are likely to improve reading attainments. Previous studies have indicated a correlation between these areas but it is difficult to establish the cause of this correlation. Large-scale longitudinal work is required to assess whether these relationships exist and whether they vary with ability or age (for example, it could be that self-belief is more important for poor readers or in adolescence)

Date proposal received: 
Thursday, 5 February, 2015
Date proposal approved: 
Thursday, 12 February, 2015
Keywords: 
Primary keyword: 
Engagement

B2386 - The development of an integrated OMICS signature that links in utero air pollution to growth and cardiovascular health - 05/02/2015

B number: 
B2386
Principal applicant name: 
Bianca Cox (Centre for Environmental Sciences, Hasselt University, EU)
Co-applicants: 
Title of project: 
The development of an integrated OMICS signature that links in utero air pollution to growth and cardiovascular health
Proposal summary: 

Hypotheses:

In utero particulate matter exposure has been linked to adverse pregnancy outcomes such as low birth weight and intrauterine growth retardation, which in turn have been linked to adult cardiovascular disease and metabolic abnormalities such as obesity, hypertension, insulin resistance and glucose intolerance. These findings suggest that adverse intrauterine conditions that promote reduced birthweight, such as air pollution exposure, may also promote lifelong susceptibility to cardiovascular diseases. Although it is becoming clear that in utero exposure to environmental stressors plays a role in fetal metabolic programming, the mechanisms are still unclear. The investigation of OMICS measurements at different molecular levels provides an insight into the biological pathways involved in the process linking in utero air pollution exposure to early life growth and cardiovascular development.

Aims:

The objective of this project is to derive a molecular pathway linking in utero air pollution exposure to fetal and childhood growth and to study potential consequences on the development of the cardiovascular system. I address four main objectives:

1) The investigation of prenatal and postnatal growth in association with in utero air pollution exposure.

2) The derivation of biomarkers (within in each OMICS level) linking prenatal air pollution exposure to growth trajectories in the first years of life.

3) The identification of common patterns across different OMICS levels (cross-omic analyses) in order to get an insight into the biological pathways involved in the association between in utero air pollution exposure and growth.

4) The investigation of the role of early life growth and the derived OMICS signature in the association between prenatal air pollution exposure and cardiovascular endpoints in childhood and early adulthood.

Date proposal received: 
Friday, 30 January, 2015
Date proposal approved: 
Thursday, 5 February, 2015
Keywords: 
Growth, Metabolomics
Primary keyword: 
Pollution

B2385 - Genome wide association study for physical activity and sedentary behaviour - 05/02/2015

B number: 
B2385
Principal applicant name: 
Dr Rebecca Richmond (University of Bristol, UK)
Co-applicants: 
Dr Nic Timpson (University of Bristol, UK), Miss Mary Ward (University of Bristol, UK)
Title of project: 
Genome wide association study for physical activity and sedentary behaviour
Proposal summary: 

This analysis will form part of an expanded meta-analysis for self-reported moderate and vigorous leisure time activity and sedentary behaviour. Our first goal is to capture a dichotomous trait corresponding to moderate and vigorous leisure activity. Such activity would not include occupation-related activity (i.e. shoveling, heavy-lifting) and/or light leisure activity (i.e. walking, gardening). The second goal is to capture all aspects of sedentary behaviour for which we defined four traits; three dichotomous traits, reflecting sedentary behaviour at work, home and during commuting, and one continuous trait: TV viewing.Separate GWAS analyses will be run for male and female offspring and the mothers. Covariates included in the models are age and body mass index.

Date proposal received: 
Friday, 30 January, 2015
Date proposal approved: 
Thursday, 5 February, 2015
Keywords: 
Physical Activity
Primary keyword: 
GWAS

B2383 - MR of blood pressure and NMR metabolites - 29/01/2015

B number: 
B2383
Principal applicant name: 
Dr Fotios Drenos (University of Bristol, UK)
Co-applicants: 
Peter Wurtz (University of Helsinki, Finland), Johannes Kettunen (University of Helsinki, Finland), Prof Mika Ala-Korpela (University of Bristol, UK), Prof Debbie A Lawlor (University of Bristol, UK)
Title of project: 
MR of blood pressure and NMR metabolites
Proposal summary: 

Higher blood pressure is associated with increased cardiovascular and renal disease and premature mortality. Although some of the biological pathways and disease endpoints linked to blood pressure changes are well understood, a large number of them remain unexplained. Higher blood pressure is associated with other risk factors for cardiovascular and renal disease, including dyslipideamia, hyperglycaemia and insulin resistance (referred to collectively as metabolites) and higher levels of inflammatory markers, which might mediate any causal effect of higher blood pressure on later disease. But associations with these other risk factors and their joint role in causing later disease could reflect several different alternatives:

1.Blood pressure causes variation in these other risk factors and via these effects causes later CVD and other diseases.

2.These other risk factors cause variation in blood pressure and the primary causal agents are the metabolites/inflammatory markers with blood pressure being more downstream and proximal to disease endpoints.

3.There is a bidirectional causal relationship between BP and metabolites/inflammatory markers

4.There is no causal relationship between blood pressure and metabolites/inflammatory markers, but rather the association is confounded, for example by socioeconomic position, lifestyle characteristics and obesity. .

In preliminary analyses, we have already identified a number of metabolites from the NMR platform that are strongly correlated with BP. We want to extend this work by using Mendelian randomization (MR) to determine whether the relationships are causal and if so which direction they are in (i.e. to distinguish which of the 3 alternatives listed above is most likely).

With UCLEB we can increase the number of available individuals to more than 30 000, all with blood pressure measurements, GWAS or other array genotyping, and NMR metabolites and inflammatory markers.

We will use the known BP genetic instruments to assess whether BP is causally related to the metabolites and inflammatory markers (alternative 1 or 3 above vs 4) and metabolite instruments from recent GWAS to test whether metabolites are causally related to BP (alternative 2 or 3 vs 4).

Date proposal received: 
Tuesday, 27 January, 2015
Date proposal approved: 
Thursday, 29 January, 2015
Keywords: 
Blood Pressure, Mendelian Randomisation
Primary keyword: 
Metabolomics

B2384 - Novel Epidemiological Methods to Infer Causal Effects of Risk Factors on Neuropsychiatric Cardiovascular Disorder - 29/01/2015

B number: 
B2384
Principal applicant name: 
Dr Marie-Jo Brion (University of Bristol, UK)
Co-applicants: 
Prof George Davey Smith (University of Bristol, UK)
Title of project: 
Novel Epidemiological Methods to Infer Causal Effects of Risk Factors on Neuropsychiatric & Cardiovascular Disorder
Proposal summary: 

BACKGROUND

This project focuses on developing methodological applications for analysing "omics" data resources (genome-wide genotypes, metabolomics, the epigenome), an area that has exciting prospects for observational epidemiology (Brion et al., Curr Epidem Rep 2014). We have previously published work indicating that genome-wide allelic scores can be used to data-mine large numbers of associations between biological intermediates and disease-related outcomes and screen for potentially causal relationships (Evans, Brion et al., PLoS Genetics 2013). We would like to build on this work and investigate the use of similar allelic scores in studies based on metabolomic and epigenetic measures. In addition, we would like to develop and implement novel applications of Mendelian Randomization to these genome-wide genotype, epigenetic and metabolomic measures, such as by implementing bidirectional MR (Welsh et al., J Clin Endocrin Metab, 2010) and MR for mediation (Relton & Davey Smith, IJE 2012). We would then implement these methods to test causal relationships involving blood methylation (epigenetic) markers and metabolomic measures.

AIMS

1.To develop and test novel epidemiological approaches, such as Mendelian Randomization and data-mining approaches, that exploit the availability of high throughput biological data (genome-wide single nucleotide polymorphism (SNP) data, epigenetic, metabolomic).

2.To apply these novel methods to infer the causality between risk factors, such as environmental exposures and biomarkers, with cardiovascular and psychological outcomes, through potentially mediating epigenomic and metabolomic pathways.

Date proposal received: 
Tuesday, 27 January, 2015
Date proposal approved: 
Thursday, 29 January, 2015
Keywords: 
Blood Pressure, Mendelian Randomisation, Metabolomics
Primary keyword: 
Metabolomics

B2381 - Trajectories of Brain Injury in the ALSPAC cohort - 22/01/2015

B number: 
B2381
Principal applicant name: 
Eleanor Kennedy (Not used 0, Not used 0)
Co-applicants: 
Prof Marcus Munafo (University of Bristol, UK), Prof Ian Penton-Voak (University of Bristol, UK), Dr Jon Heron (University of Bristol, UK)
Title of project: 
Trajectories of Brain Injury in the ALSPAC cohort
Proposal summary: 

Aims:

The aim of the study is to investigate the trajectories of traumatic brain injury (TBI) from childhood into adolescence using the ALSPAC cohort. In particular the study will explore the impact that a single TBI event and recurrent TBI events will have on aspects of social cognition, risk behaviour engagement and general cognition. The control groups will include participants who have had a broken bone/fracture and also participants who have never had an injury. There will be exploratory analyses conducted to see whether the detrimental effects of recurrent TBI events are greater than for a single TBI event.

Social cognition can be broadly conceived as the ability to understand other people through emotion perception and empathy and also by inferring the beliefs, intentions and feelings of others 1 Following a TBI event, many facets of social cognition have been shown to be impaired, such as the recognition of facial emotional expressions 1-4; however, current evidence is hampered by small, heterogeneous sample sizes 1.

Engagement in risky behaviour such as substance use has been implicated as an outcome of TBI 5-8. One large cohort study demonstrated that a TBI injury requiring hospitalisation between the ages of 0-5 years old increases the risk for adolescent substance use 5; while findings from another birth cohort indicate that drinking to intoxication is more common among 14 year olds who have experienced a TBI compared to those who have not 6. Ilie and colleagues 7 found that high school students who had experienced a TBI had higher odds of using illicit substances, were twice as likely to consume hazardous amounts of alcohol and were at greater risk for cannabis dependence. Likewise, in a group of incarcerated youths, those with a TBI history were found to be more likely to engage in risky alcohol and cannabis use as well as weekly use of another illicit drug prior to incarceration; this was also the case for participants reporting multiple TBI events9. In comparison to a single TBI event, individuals who have experience two or more TBI events have reported more frequent alcohol, tobacco and illicit drug use 8.

The sequelae of TBI is characterised by cognitive problems 10. Corrigan and colleagues 11 compared different characteristic profiles of TBI histories in persons with substance use disorders and found that a TBI event occurring between the ages of 6-10 may lead to slower processing speed and a greater number of cognitive complaints, while working memory was more impaired in those with a severe adult TBI, mild adolescent injury or multiple mild injuries. Elsewhere, processing speed has been found to be more impaired in participants with more than one TBI resulting in loss of consciousness than in participants who have had just one TBI 8.

Predictors of TBI from birth cohort studies include male gender 6,12, parental alcohol misuse 6, a punitive parenting style and the number of adverse life events experienced by the family 12. These will be controlled for in the proposed study.

Date proposal received: 
Monday, 19 January, 2015
Date proposal approved: 
Thursday, 22 January, 2015
Keywords: 
Cognition
Primary keyword: 
Injury

B2380 - Metabolic effects of statin therapy longitudinal and genetic evidence - 22/01/2015

B number: 
B2380
Principal applicant name: 
Prof Mika Ala-Korpela (MRC Integrative Epidemiology Unit, UK)
Co-applicants: 
Prof Debbie A Lawlor (University of Bristol, UK), Peter Wurtz (University of Oulu, Europe), Qin Wang (University of Oulu, Europe), Johannes Kettunen (Not used 0, Not used 0)
Title of project: 
Metabolic effects of statin therapy: longitudinal and genetic evidence.
Proposal summary: 

Aims: Statins are first-line therapy for cardiovascular prevention, yet the effects of statins on lipoprotein subclasses and circulating fatty acids remain unclear. Statin usage may further influence other pathways beyond lipid lowering. We aim to assess the detailed metabolic effects of starting statin therapy by quantitative NMR metabolomics profiling in 4 longitudinal cohort studies with 2 20 years of follow-up (including ALSPAC mothers).

Hypotheses: Starting statin usage is associated of all LDL lipids to a similar extend, but deviating patterns may be observed for detailed VLDL subclasses and their cholesterol and triglyceride levels. We hypothesize that statin lower all fatty acid concentrations, but more so for omega-6 fatty acids than for omega-3 and mono-unsaturated fatty acids. Finally, we will assess the effects of statins on numerous small molecules (including amino acids, glycolysis precursors and ketone bodies) to examine potential non-lipid effects of statins. Longitudinal analyses will be corroborated by genetic analysis, using established genetic instruments to proxy the effect of the statin target: HMGCoA reductase inhibition. Analyses: Associations with starting statin usage with NMR-based metabolite data will be meta-analysed in 4 cohorts including ALSPAC mothers. Genetic associations of 2 SNPs in HMGCR will be tested in 9 population-based cohorts including ALSPAC children & mothers.

Confounding variables: Longitudinal analyses will be adjusted for age and sex. Genetic analyses will be adjusted for age, gender, and population structure if available.

Date proposal received: 
Saturday, 17 January, 2015
Date proposal approved: 
Thursday, 22 January, 2015
Keywords: 
Genetics
Primary keyword: 
Metabolomics

B2379 - Using parents experiences to investigatehow to prevent high risk primary school children developing antisocial and criminal behaviour - 22/01/2015

B number: 
B2379
Principal applicant name: 
Madeleine Stevens (London School of Economics & Political Science, UK)
Co-applicants: 
Prof Jennifer Beecham (London School of Economics & Political Science, UK)
Title of project: 
Using parents? experiences to investigate how to prevent high risk primary school children developing antisocial and criminal behaviour
Proposal summary: 

Aims:

The study aims to investigate what interventions, services or policies could help prevent primary-school

children with conduct problems, living in high risk families, from developing antisocial and criminal

behaviour as they grow older. The study aims to take a broad view as to what could help and has therefore

been designed in two phases. Phase One is a qualitative longitudinal interview study with ten families to

build hypotheses about what might help. I would like to use ALSPAC data in Phase Two of the study. In

Phase Two the aim is to access longitudinal data on larger samples of similarly high need families that

include a child with behaviour problems to explore issues arising from the qualitative interviews. I aim to

explore possible modifiers (referred to as 'modifying factors') of the association between risk factors and

outcomes (antisocial and criminal behaviour in later adolescence). The aim is not to identify pre-existing

protective factors but to look at changes occurring between beginning primary school and adolescence

which appear to indicate a move onto a more positive trajectory. Outcomes will be compared for matched

groups of children who have or have not experienced the modifying factor/exposure. The matching will

be based on risk factors for the ultimate outcomes of interest, i.e.antisocial and criminal behaviour at ages

16+, and it is proposed that propensity score matching be used. This matching will make use of existing

knowledge about factors associated with resilience in an effort to control for these and isolate the impact

of later occurrences (e.g. Bowen, Heron, Steer, & El Comy, 2008). The method is imperfect for looking

at effectiveness of intervention but provides one route to addressing the possibly serious consequences of

prioritising easy-to-research interventions.

Date proposal received: 
Friday, 16 January, 2015
Date proposal approved: 
Thursday, 22 January, 2015
Keywords: 
Parenting
Primary keyword: 
Behavioural Problems

B2378 - Do social cognitive deficits at an early age predict substance abuse problems at later ages - 22/01/2015

B number: 
B2378
Principal applicant name: 
Meg Fluharty (MRC Integrative Epidemiology Unit, UK)
Co-applicants: 
Prof Marcus Munafo (University of Bristol, UK), Dr Jon Heron (University of Bristol, UK)
Title of project: 
Do social cognitive deficits at an early age predict substance abuse problems at later ages?
Proposal summary: 

Aims

The aim of this project is to explore whether early deficits in social cognition are associated with later substance abuse problems. Previous studies have shown that impairments of social cognition are common amongst individuals who abuse substances. For example, alcohol (1), opiate (2), and tobacco (3) use have all been associated with impaired recognition of facial emotional expression. Additionally, these impairments persist when smokers become abstinent (4) and when alcoholics are detoxified (5), suggesting addicted individuals' may rely upon substances to aid their social cognitive abilities. Furthermore, these deficits are sustained up to ~2 months into sobriety (6). This raises the question of whether it is substance abuse itself that cause these deficits, or whether these deficits lead to substance use (for example, to enhance certain aspects of social cognition).

Date proposal received: 
Friday, 16 January, 2015
Date proposal approved: 
Thursday, 22 January, 2015
Keywords: 
Cognition
Primary keyword: 
Substance Use

B2377 - Clarifying the SES-Health Gradient The Case for an Epigenetic Mechanism - 15/01/2015

B number: 
B2377
Principal applicant name: 
Janelle Jones (Queen Mary, University of London, UK)
Co-applicants: 
Dr Jordana Bell (King's College London, UK), Dr Caroline Relton (University of Bristol, UK), Dr Michael Pluess (University of California, USA), Dr Vardhman Rakyan (Queen Mary, University of London, UK)
Title of project: 
Clarifying the SES-Health Gradient: The Case for an Epigenetic Mechanism
Proposal summary: 

Socioeconomic status (SES), an individual's position in society, is defined by a number of interrelated individual, structural, and environmental factors (e.g., income, education, neighborhood). We have known for some time that an SES-health gradient exists (i.e., low SES associated with poor health, high SES associated with good health) but exactly what it is about SES that gets into the body to shape health is still unclear. Yet, understanding these biological mechanisms will be critical for minimizing the costs of low SES for health as well as maximizing the benefits of high SES for health. This lack of clarity may reflect variations in the measurement of SES, a lack of recognition of factors that influence for whom the SES-health gradient will hold and, until recently, limited availability of epigenetic data. We contend that in order to clarify how SES might get into the body to influence health we should first, determine which indictor(s) of SES, and in which combinations, might work to influence biological mechanisms and second, we should consider whether there might be specific factors that influence for whom SES might get into the body to influence mental and physical health. We believe that psychological well-being is an excellent candidate. The key biological mechanism that we will focus on in these relationships is DNA methylation.

Date proposal received: 
Wednesday, 14 January, 2015
Date proposal approved: 
Thursday, 15 January, 2015
Keywords: 
Psychology, Social Position
Primary keyword: 
Epigenetics

B2376 - Child PTSD and longitudinal adverse outcomes - 15/01/2015

B number: 
B2376
Principal applicant name: 
Dr Sarah Louise Halligan (University of Bath, UK)
Co-applicants: 
Dr Abigail Fraser (University of Bristol, UK)
Title of project: 
Child PTSD and longitudinal adverse outcomes
Proposal summary: 

The aim of the proposed study is to provide information regarding potential adverse outcomes associated with trauma exposure and posttraumatic stress symptoms (PTSS). Existing data suggest that youth trauma exposure and/or PTSS are associated with adverse outcomes in several domains including: substantially increased odds of objective physical disease states (Seng et al, 2004); poorer educational attainment (Hurt et al, 2000); engagement in substance use and other risky behaviours (Begle et al, 2011); and increased likelihood of antisocial behaviours/involvement in the youth juvenile justice system (Ford et al, 2010; Abram et al, 2004). However, existing studies are predominantly cross-sectional raising issues of cause versus consequence; or they have focused on specific populations or types of trauma, limiting the generalisability of the findings. The longitudinal data afforded by the ALSPAC cohort would allow for an analysis of whether youth trauma and PTSS contribute to later adverse outcomes, even once concurrent problem levels are taken account of.

Date proposal received: 
Wednesday, 14 January, 2015
Date proposal approved: 
Thursday, 15 January, 2015
Keywords: 
Primary keyword: 
Stress

B2375 - Genetic and environmental risk factors for the development and maintenance of PTSD with the ALSPAC cohort - 15/01/2015

B number: 
B2375
Principal applicant name: 
Dr Catrin Lewis (University of Cardiff, UK)
Co-applicants: 
Professor Jonathan Bisson (University of Cardiff, UK), Dr Stanley Zammit (University of Bristol, UK)
Title of project: 
Genetic and environmental risk factors for the development and maintenance of PTSD with the ALSPAC cohort
Proposal summary: 
Date proposal received: 
Thursday, 8 January, 2015
Date proposal approved: 
Thursday, 15 January, 2015
Keywords: 
Stress
Primary keyword: 
Genetics

B2366 - Exploring the relationship between antibiotic exposure in early life and psychological problems in preschool years - 08/01/2015

B number: 
B2366
Principal applicant name: 
Christopher Brian King (McMaster University, ROW)
Co-applicants: 
Dr Khrista Boylan (McMaster University, ROW)
Title of project: 
Exploring the relationship between antibiotic exposure in early life and psychological problems in preschool years
Proposal summary: 

Research Question:

Are infants born to the ALSPAC cohort who received one or more courses of antibiotics during the fetal and early life more likely to develop psychological problems during their preschool years when compared to children who were not exposed to antibiotics?

Hypothesis:

It is hypothesized that antibiotic exposure during fatal and early life will disrupt the natural development of the human microbiome during a critical window of vulnerability. This will result in behavioural changes which will be observed as a higher prevalence of psychological problems in preschool years.

Date proposal received: 
Tuesday, 30 December, 2014
Date proposal approved: 
Thursday, 8 January, 2015
Keywords: 
Education
Primary keyword: 
Genetics

B2365 - Rare copy number variants and education achievement - 08/01/2015

B number: 
B2365
Principal applicant name: 
Alexandre Reymond (University of Lausanne, Switzerland)
Co-applicants: 
Nick Timpson (University of Bristol, UK), Katrin mannik (technopolis Group, EU), Andres Metspalu (The Estonian Genome Center of the University of Tartu, EU)
Title of project: 
Rare copy number variants and education achievement
Proposal summary: 

Aims and hypothesis

The impact of rare copy number variants (CNVs) has almost exclusively been evaluated using clinical cohorts; it is thus unclear how these variants affect health in the general population. Our aim is to assess the genome-wide burden of rare CNVs on carriers' health and life quality in general population. We have conducted genotype and phenotype analyses of a random sample of 7877 adult individuals from the population biobank of Estonia (Estonian Genome Center, University of Tartu; Tartu, Estonia). Using this set we generated a genome-wide map of rare autosomal CNVs and identified 10.5% of the screened adult general population (n=831) as carriers of CNVs >=250kb with frequency <=0.05%. We found that when compared to the population, carriers of deletions >=250kb and duplications >=1Mb show lower education achievements (a proxy for intelligence) and a greater prevalence of intellectual disability. These effects are associated with the number and functions of contained genes, e.g. rare deletions are significantly enriched for genes with a role in neurogenesis, cognition, learning, memory and behavior. Interestingly, the effect on education attainment was more pronounced in female carriers of rare deletions in general population, who were also overrepresented amongst carriers.

Our results suggesting that rare CNVs contribute to a substantial portion of the population variance of educational attainment need to be replicated in a geographically independent cohort. The ALSPAC cohort of mothers and children would provide us, in collaboration with group of Dr. Nicholas Timpson, a valuable result as (i) ethnically unrelated to the discovery cohort; (ii) sufficient sample size of individuals with CNVs calls; (iii) the cognitive information of children is unbiased by preselection; (iii) large number of uniformly recruited females provides a possibility to validate the female effect of rare CNVs.

Date proposal received: 
Tuesday, 30 December, 2014
Date proposal approved: 
Thursday, 8 January, 2015
Keywords: 
Education
Primary keyword: 
Genetics

B2364 - Genetics and genomics of polycystic ovary syndrome and related sub-phenotypes - 08/01/2015

B number: 
B2364
Principal applicant name: 
Dr Cecilia Lindgren (Wellcome Trust Centre for Human Genetics, UK)
Co-applicants: 
Prof Debbie A Lawlor (University of Bristol, UK), Mr George McMahon (University of Bristol, UK), Dr Abigail Fraser (University of Bristol, UK), Dr Hany Lashen (University of Sheffield, UK)
Title of project: 
Genetics and genomics of polycystic ovary syndrome and related sub-phenotypes
Proposal summary: 

Polycystic ovary syndrome (PCOS) is a complex disorder causing metabolic disturbances and reduced fertility in women of reproductive age, the definition of which is an on-going debate among researchers in the field. PCOS is characterized by hyperandrogenism, chronic anovulation and glucose homeostasis. It is one of the most common endocrinopathies affecting 5-15% of women of reproductive age worldwide and causes more than 75% of cases of anovulatory infertility. The etiology of PCOS is largely unknown though contains a clear genetic component. However, to date, the only available PCOS genome-wide association data have reported 11 significant loci and come from a study of Han Chinese individuals. We, in the PCOS consortia, that consists of 15+ research teams, are gearing up to perform their first and second waves of genome-wide and also exome-wide association meta-analyses in up to 15,000 cases and 80,000 controls of European decent, as well as extensive pathway analysis and genomic follow-up. The overall aim is to identify genetic variation, transcripts and pathways that are associated with PCOS susceptibility (and related subphenotypes). We will perform case:control analysis for PCOS itself and for some of the related subphenotypes which present as dichotomous outcomes. We will in parallel perform quantitative analysis for subphenotypes that are quantitative traits. We will adjust for standard confounders like age and also investigate what effect related phenotypes like BMI have on the PCOS results by performing both adjusted and unadjusted analysis. The genetic and genomic discovery paired with biologic follow-up, holds the promise of bridging and linking knowledge from the metabolic and gynecologic disease fields and yield clinically useful information.

Date proposal received: 
Sunday, 28 December, 2014
Date proposal approved: 
Thursday, 8 January, 2015
Keywords: 
GWAS
Primary keyword: 
Obstetrics

B2363 - Meta-analysis of the association of gestational weight gain with offspring outcomes - 08/01/2015

B number: 
B2363
Principal applicant name: 
Prof Debbie A Lawlor (University of Bristol, UK)
Co-applicants: 
Dr Romy Gaillard (Erasmus University Medical Center, Rottterdam, the Netherlands, Europe), Dr Vincent Jaddoe (Erasmus University Medical Center, Rottterdam, the Netherlands, Europe)
Title of project: 
Meta-analysis of the association of gestational weight gain with offspring outcomes
Proposal summary: 

Background

Maternal early- / pre-pregnancy BMI and gestational weight gain have been shown to be positively associated with offspring greater adiposity in later life in numerous prospective cohort studies, including in previous publications from ALSPAC. However, the extent to which this association is causal or due to bias (including publication bias, where studies that show a positive association are more likely to be published) is unclear.

We want to explore this by undertaking an individual participant meta-analysis in all birth cohorts (globally) that we can identify and that have relevant data. Our aim is that this should allow us to obtain precise estimates that are less likely to be influenced by publication bias than undertaking a systematic reivew and meta-analysis of published studies.

Further we want to compare association of maternal exposures with offspring outcomes to the same associations in fathers in order to determine whether there is evidence of specific maternal associations, which would support a intrauterine causal effect.

Aims and objectives

1. To undertake an independent participant data meta-analysis of the association of maternal pre-pregnancy BMI and gestational weight gain with offspring adiposity and body composition.

2. To compare associations of maternal exposures with offspring outcomes to the same associations of paternal exposures to explore whether associations in mothers are likely to represent intrauterine causal mechanisms

3. To explore the extent to which any associations might be mediated by birth characterists and later offspring activity and energy intake

Date proposal received: 
Sunday, 28 December, 2014
Date proposal approved: 
Thursday, 8 January, 2015
Keywords: 
Cross Cohort Study, Pregnancy
Primary keyword: 
Weight

B2373 - Dietary zinc intake in the ALSPAC cohortan investigation of dietary sources and growth outcomes - 08/01/2015

B number: 
B2373
Principal applicant name: 
Dr Caroline M Taylor (University of Bristol, UK)
Co-applicants: 
Dr Pauline Emmett (University of Bristol, UK)
Title of project: 
Dietary zinc intake in the ALSPAC cohort: an investigation of dietary sources and growth outcomes
Proposal summary: 

Aims and hypothesis

Preliminary investigations have shown that average dietary zinc intakes in the Avon Longitudinal Study of Parents and Children (ALSPAC) cohort are below those recommended for children and this could be associated with deficits in long-term growth.

Exposure variables

The project will use the dietary data collected longitudinally from ALSPAC children from which nutrient intakes have been calculated. This will be combined with weight and height data collected at several time points throughout childhood. The project will investigate which foods and food groups contribute to zinc intakes in children age 1.5-13 years and whether this has an effect of height and body mass index at several time points throughout childhood.

Date proposal received: 
Tuesday, 6 January, 2015
Date proposal approved: 
Thursday, 8 January, 2015
Keywords: 
Growth
Primary keyword: 
Diet

B2372 - Intake of free sugars in the ALSPAC cohort an investigation of dietary sources and obesity outcomes - 08/01/2015

B number: 
B2372
Principal applicant name: 
Dr Caroline M Taylor (University of Bristol, UK)
Co-applicants: 
Dr Pauline Emmett (University of Bristol, UK)
Title of project: 
Intake of free sugars in the ALSPAC cohort: an investigation of dietary sources and obesity outcomes
Proposal summary: 

Aim and hypothesis:

Preliminary investigations have shown that free sugars intakes in the Avon Longitudinal Study of Parents and Children (ALSPAC) cohort are above those recommended as a maximum for children and may be associated with fast early growth and obesity outcomes.

Date proposal received: 
Tuesday, 6 January, 2015
Date proposal approved: 
Thursday, 8 January, 2015
Keywords: 
Obesity
Primary keyword: 
Diet

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