Proposal summaries
B2168 - Investigation of the role of habitual exposure to high impact activity in the attainment of peak bone mass - 20/02/2014
Aims/hypotheses
* We will determine whether habitual exposure to high impacts influences peak bone mass (PBM), by investigating whether these impacts explain the relationship between habitual physical activity and PBM as measured by DXA
* We will examine whether effects of high impacts on PBM translate into greater bone strength, by studying relationships between high impacts and cortical bone strength as assessed by pQCT
* We will determine if a critical time exists in bone development when high impacts exert the greatest long term effects on PBM
* We will investigate whether relationships between exposure to high impacts and PBM represent a causal effect, as opposed to common dependence on intrinsic muscle strength (assessed by jumping mechanography), given physical activity affects muscle strength and muscle strength independently affects bone mass
* We aim to identify whether factors which influence PBM act via altered responsiveness to high impact activity
o We will determine whether individuals with low fat mass show weaker relationships between high impact activity and PBM. Whether such a relationship is explained by altered calorie intake will be investigated, along with the contribution of altered eating behaviour
o We will study whether interactions exist between high impact activity, PBM and constitutive factors affecting cortical bone development eg insulin, adiponectin, bone resorption
* What are the other benefits of high impact exercise for musculoskeletal health? We will investigate whether high impact exercise is associated with musculoskeletal pain, or aspects of hip shape implicated in the pathogenesis of osteoarthritis.
B2177 - Identification of novel early life environmental exposures that increase the risk of childhood asthma - 20/02/2014
The aim of the proposed project is to relate specific IgE sensitisation to flour allergens in children and parental occupational exposure to flour.
B2176 - Characterisation of transgenerational determinants of disease risk induced by ancestral or early-life parental exposures - 20/02/2014
This is part of an EU proposal which will be led by Olle Bygren at the Karolinska Institute in Stockholm. The over-arching aim of the study is to determine transgenerational effects of smoking, stress and famine on subsequent generations. We propose to undertake the following two work-packages using ALSPAC:
1. Transgenerational smoking studies:
Detailed information was collected from the parents during pregnancy concerning their own backgrounds, including their childhood. The details included the age at which the parents started to smoke, the maximum amount they had smoked in their lifetime, the duration in years that they had smoked,and the amounts they were smoking at three stages of the study pregnancy. There was also information on the preceding generation [including whether the parents' own parents were smokers, and whether the grandmother smoked when expecting the study parent]. Information on the study 'child' is now available concerning the age at which he/she started smoking, and the amount smoked in adolescence and will be available for the early 20s.
The data currently available allow detailed time-related data on active and passive smoke exposure of the grandparents, the parents and the child. Although we have carried out research projects on: (a) the association between paternal onset of regular smoking in the pre-puberty [slow growth] period, and (b) exploration of the effects of parental prenatal smoke exposure on the anthropometry of the study children, there is much still to be done.
The long-term effects across the generations of active and passive smoke exposure will be assessed for the first time in a human population. This work-package will determine whether there are other outcomes [we have already shown associations with height, fat and lean mass in the next generation to age 17; these observations will be extended in this work-package to age 24]. Candidate outcomes will include factors that have been linked with smoking in a single generation or with prenatal exposure, but not across generations. Possibilities include: markers of the metabolic syndrome such as insulin resistance, reproductive outcomes such as miscarriage and subfertility; myopia; hyperactivity; conduct disorder and criminal behaviour; neurocognitive and motor development.
2. Transgenerational stress studies:
Detailed information was collected from the parents during pregnancy concerning their own backgrounds, including their childhood. Information included traumatic events, such as separation, divorce or death of a parent, physical or emotional abuse and neglect, with a childhood traumatic life event scale of over 40 items. The parents also completed life event scales to cover the first half of pregnancy, and subsequent approximately annual periods for the first 10 years after delivery. In parallel a series of similar questions elicited traumatic events experienced by the study child at approximately annual periods.
The data currently available allow detailed time-related data on traumatic events to the parents and to the child. Ideally, the study would benefit from knowledge of traumas to the generation before. This work package will be used to make detailed enquiries of the parents in regard to the childhood of their own parents. This would particularly enquire about their experience of World War II - where were they, were they evacuated, were they bombed, did they lose family members as a consequence, etc.
Outcome variables that will be considered include neurocognitive development and motor abilities [we have already shown a strong association between maternal stress in mid-childhood and developmental coordination disorder in the child], as well as growth. We will look in particular at differences between the study offspring according to whether the maternal or paternal parents experienced the trauma, the ages at which it occurred, and the sex of the offspring.
B2167 - Perceptual disturbance of body image as an early risk factor for eating disorders - 14/02/2014
Aims:
1. Investigate factors associated with differences between perceived/actual body size (6.5yrs).
2. Investigate whether such discrepancies predict symptoms of anorexia (14 yrs).
B2165 - The neighbourhood level social and spatial distribution of people with psychotic and affective symptoms at age 18 - 13/02/2014
Aims
This study has five specific aims
1. To describe the prevalence of psychotic and affective symptoms at age 18 years according to neighbourhood-level characteristics at 18-years old, 12-years old, 7 years old and birth using advanced spatial epidemiology
2. To conduct Hierarchical Bayesian Modelling (HBM) to investigate the extent to which psychotic and affective symptoms share a common risk component at the neighbourhood level at each period of the life course
3. To conduct multilevel logistic regression to examine whether duration of exposure to neighbourhood level social disadvantage is associated with the risk of psychotic symptoms at age 18.
4. To examine whether maternal and child-reported perceptions of neighbourhood safety and cohesion are associated with elevated levels of psychotic symptoms, depressive and anxiety symptoms and internalising and externalising disorders in chilhdood
5. To explore the pathways through which exposure to neighbourhood social disadvantage over the life course is associated with psychosis risk, with particularly interest in the mediating role of urban living on the association between individual-level early life adversity, childhood cognitive ability and psychotic symptoms at ages 12 and 18.
B2149 - The lifecourse of the auditory system - 13/02/2014
Aims
1. Characterise the hearing of the cohort from the ages 7 to 14
2. Explore the associations of a range of exposures (physiological, environmental, genetic and epigenetic) with hearing at age 7 to 14
3. Directly assess the hearing of the ALSPAC cohort at age 24
4. Characterise the changes in hearing from age 7 to 24
5. Explore the association of a range of exposures (physiological, environmental, genetic and epigenetic) with the changes in hearing
6. Examine the impact of hearing loss at age 24 on educational outcomes & employment
7. Examine the association of hearing at age 24 with co-morbidities such as visual impairment, mental health, cognitive abilities and precusors to CVD.
B2164 - ALSPAC Epigenomics Strategic Award 2014 - 13/02/2014
Aims
* To enhance ALSPAC to incorporate detailed annotation of epigenomic features and additional epigenomic profiling to provide an internationally leading, widely accessible, population-based reference resource.
To exploit the unique scientific opportunities afforded by ALSPAC to identify epigenetic signatures of exposure, track their persistence over time, across generations and evaluate their relationship with development and disease.
To assess the genetic contribution to DNA methylation variation through leadership of a Genome-Wide Association Study Consortium
To develop a "statistical tool-kit" to facilitate the analysis of population-based epigenetic data
B2163 - Using Mendelian Randomisation to assess causal links between metabolic traits and vascular dysfunction in the young - 13/02/2014
Objectives
Genome-wide association studies (GWAS) have identified genetic variants associated with body mass index (BMI) and blood pressure (BP) in both adults and children (Speliotes 2012, and the International Consortium for Blood Pressure GWAS 2011).
We, at Vascular Physiology Unit, have shown that although greater childhood obesity is associated with adverse metabolic risk factors, there was no evidence of vascular damage by obesity at age 9-11 years in the ALSPAC subjects. Systolic BP was strongly associated with greater adiposity and also increased vascular dysfunction at that age (Charakida 2012). The causal direction and nature of the association between BMI and BP is unclear at this age.
I will investigate the effect of BMI, BP and other metabolic traits on vascular dysfunction ain the young by using a combination of Mendelian randomization and conventional analyses to unravel the complex association between BMI, SBP, metabolic traits and their causal role in vascular dysfunction.
I will be working in collaboration with Kaitlin Wade (PhD student at Bristol) on this project.
B2162 - The role of fathers in the perinatal period positive outcomes and resilience - 13/02/2014
Aims:
In this secondary analysis of the ALSPAC study, we have five aims.
First, we aim to establish what constitutes paternal involvement with the child in the perinatal period. We will be evaluating aspects of the father-infant relationship antenatally, as well as postnatally in terms of attitudes towards parenting, attachment with the child, infant temperament, father's mood and feelings, among others. Second, we will study those aspects of early father involvement that are associated with positive outcomes for the child in terms of scores on the SDQ (*others?). Third, we are interested to know whether the mental health of fathers provides a protective effect to the mental health and wellbeing of the mother. Fourth, we are interested to establish how the quality of the father-mother relationship effects the healthy emotional and behavioural development of the child. Finally, we are looking to identify those early factors involved in positive child outcomes in the father-infant relationship that are amenable to intervention.
B2159 - Using siblings to understand family process in child behaviour problems - 06/02/2014
Aims:
We propose two linked projects; one addressing sibling, parent-child, and marital interaction quality as predictors of children's strengths and difficulties, and one addressing between- versus within-family risk factors for the development of adolescent antisocial behaviour.
B2158 - Excessive drinking and alcohol related harms in Adulthood ALSPAC at 24 - 06/02/2014
AIMS
We propose repeating the detailed MRI examinations on 125 participants from ALSPAC who were scanned at 18 years as controls for a study of psychotic symptoms (MRC, PLIKS) in order to test the hypothesis that differences in brain structure and dysregulation in function are associated with AU. Thus:-
1. We will compare MR imaging data from their first imaging session (age 18) to the second (age 24) to assess the cumulative impact of drinking alcohol during the intervening years on:
i) brain tissue macrostructure, grey and white matter, using voxel based morphometry (VBM) and cortical thickness measurements
ii) white matter microstructure, including standard diffusion tensor MRI measures (FA, mean diffusivity) and 'hindrance modulated orientational anisotropy', using diffusion MRI (dMRI), and multi-component relaxometry (mcR) to assess putative markers of myelin along specific pathways(52)
iii) activation of prefrontal cortex (PFC) during a task of working memory (n-back).
2. We will investigate whether MR imaging data (VBM, dMRI, mcR, fMRI as above) from the 1st session predicts use of alcohol during the intervening years.
Specifically we hypothesise that compared with those with limited or no drinking, those with greater cumulative alcohol consumption and those predominantly with a binge pattern during the intervening years will show: i) greater reduction in hippocampal, prefrontal, cerebellar volumes; ii) altered WM microstructure in those white matter tracts maturing later (PFC connections eg cingulum, superior longitudinal fasciculus (SLF)) compared with those maturing earlier (eg posterior limb of internal capsule; iii) greater activation during n-back task with unimpaired performance, in their 1st session and when comparing 1st and 2nd sessions.
3. We will investigate the relationship between current and cumulative alcohol consumption with MR imaging data (VBM, dMRI, mcR, fMRI as above) and from ICCAM protocol at the 2nd session, activation of PFC during inhibitory task (go-nogo(53)), activation of ventral striatum during reward task (MIDT(54)), activation of amygdala during stress (stressful images).
B2157 - GWAS on antisocial phenotypes - 06/02/2014
Study aim:
The Broad Antisocial Behavior Consortium has been established to identify genetic variants associated with antisocial behaviours. A series of meta-analyses of genome-wide association data are to be conducted on the following phenotypes: symptom counts of antisocial personality disorder, ratings of aggression, conduct problems, delinquency, and psychopathic personality disorder.
B2156 - Data mining of NMR metabolomics analysis of ALSPAC Child Mother and Fathers samples - 06/02/2014
Aims: To identify association between the available variables and the measured metabolites in order to facilitate hypothesis generation.
B2155 - Lipids heritability in GWAS - 06/02/2014
Aims: The aim of the project is to estimate the heritability of lipids and compare the coverage of this heritability by the main genotyping chips.
B2154 - Hypothesis-free Mendelian Randomisation - 06/02/2014
In genomics there are lots of non-variable base positions, because if a mutation were to occur there it would be deleterious. But of course there are many polymorphic sites that are deleterious too, and a large number that are potentially selectively neutral or functionally neutral.
An old idea for which GWAS data is now providing new evidence is that complex traits follow the infinitesimal model - where an infinite number sites each with an infinitesimally small effect exist. Of course this is not to be taken literally but the point is, is it the case that a very large number of methylation sites influence complex traits, each with a small effect?
B2161 - Applying MR to define risk factors causally related to lung cancer and their potential mediation by DNA methylation - 06/02/2014
Aim:To assess whether the association between modifable risk factors and lung cancer is mediated by DNA methylation.
B2160 - Effects of breastfeeding on childrens cognition the role of DNA methylation - 06/02/2014
Aims: The proposed project aims at investigating the potential mediating role of DNA methylation in the relationship between breastfeeding and children's cognition.
B2092 - OXTR and Autism Like Traits in ALSPAC - 30/01/2014
Aims - We aim to associate OXTR methylation level with measures of autistic like traits in cord blood derived from 1000 boys from the ALSPAC study.
Hypotheses - We hypothesize that (1) a relationship between methylation and traits exists and (2) that this relationship may depend on rs53576 genotype.
Rationale - Methylation of DNA exists in all human cells. While tissue-specific variation in DNA methylation has been observed, recent work indicates that, on the whole, methylation patterns are relatively conserved across tissue types within individuals. Published work from Connelly identified increased DNA methylation of a regulatory region of OXTR in ASD temporal cortex derived from Brodmann's area 41/42 that resulted in concomitant decreased transcription of OXTR. This brain region, a portion of superior temporal sulcus (STS), has been strongly implicated in social perception by virtue of its role in biological motion perception and theory of mind. Two of these ASD-specific DNA methylation changes (CpG sites -934 and -860) were also apparent in the blood of ASD individuals, and unpublished data from the PI indicates that methylation of CpG site -934 may be heritable. Importantly, this region of OXTR is not present on the current arrays used in recent large scale, methylome-wide studies in ASD; thus it is necessary to assay this region using other methods for replication. We recently replicated these methylation changes in a separate sample of male ASD individuals and their unaffected male siblings derived from the Simons Simplex collection. These data suggest that 1) increased DNA methylation of OXTR may lead to reduced OXTR gene expression in the ASD brain, 2) DNA methylation increases track with the ASD phenotype and 3) peripheral blood can be used a biomarker of brain methylation.
Data from the Connely lab establish an important relationship between measures of OXTR DNA methylation in the blood and perception of animacy in dynamic displays. The attribution of social meaning to these displays is consistently disrupted in ASD. Among typically developing individuals, viewing these displays recruits brain regions associated with mentalizing processes, including STS, temporal poles, and medial prefrontal cortex. Given the likely mediating role of oxytocin in social perception, we predicted that individual differences in OXTR methylation might affect response in these brain regions when viewing animate motion in dynamic displays. We found that higher levels of OXTR methylation predicted greater activity in STS and cingulate gyrus. Our results indicate that OXTR methylation may impact the degree to which individuals are sensitive to displays of animate motion. This perceptual sensitivity could be indicative of a social style that varies within the population and is compromised in ASD. Preliminary data in a larger sample of healthy Caucasians suggests that OXTR methylation may interact with a common functional variant along OXTR (rs53576) to influence the social brain. The A allele of rs53576 is related to decreased psychological resources, dispositional empathy and stress reactivity, as well as to structural and functional differences in oxytocinergic brain sites. We examined the relationship between OXTR methylation and response in anterior cingulate cortex to social attribution and emotional faces and find an inverse correlation based on rs53576 genotype.
Sample selection - 1000 male study participants weighted by autism like traits will be selected
Exposure Variables - NONE
Outcome Variables - Variables that fall under the catagories of communicative, social, and repetitive behavior; as in Table S2 [Steer, Golding, and Bolton, PLOS ONE 2010].
Confounding Variables - Although not considered a core requirement for the diagnosis of ASD, many children exhibit other traits such as learning difficulties, specific language impairment (SLI), ADHD, ODD/ CD, anxiety problems and special education needs.
Material Requested - 200 ng of DNA at 10ng/ul for genetic and epigenetic assays.
B2153 - Evaluating LASER Learning About Safety by Experimenting Risk safety education schemes - 30/01/2014
AIMS
To assess whether children who have undergone LASER training suffered less accident and injury over time than a comparable group of children who had not experienced this training. To investigate two specific hypotheses:
1. If long-term accident rates differ by attendence at a LASER risk training intervention?
2. If long-term use of safety precaution measures differ by attendence at a LASER risk training intervention?
B2152 - Investigating the metabolic adiposity and growth phenotypes of variants in the CCND2 gene at birth and childhood - 30/01/2014
Further investigation offers the chance to understand the role of this allele in diabetes and growth. All the Decode findings reported were in adults. We now wish to use ALSPAC to investigate the following hypotheses:
1. the minor allele increases birthweight, BMI, weight and height in children, from birth throughout growth and maturity. We propose to examine all cross sectional time points , from birth to teenage years (the latest measurements), and if the data look positive, growth trajectories.
2. the association with BMI is driven by adiposity. We propose to examine DEXA derived measures of fat mass and lean mass at age 9 (as we did with FTO, ref Science 2007) and any other available ages
3. the minor allele when present in the mother increases growth in children (BMI, weight and height) . We propose to test the maternal allele's effect on offspring measures , correcting and stratifying by offspring genotype.
4. Exploratory analysis of glycaemic and adipokine measures - fasting glucose, and insulin, adiponectin, leptin and FFAs.