Proposal summaries
B1219 - Genetics of prevalent mental disorders in youth testing novel strategies - 29/07/2011
We propose to test three novel approaches to the molecular genetic bases of psychopathology in children and adolescents:
Specific Aim 1: Functional gene group analysis. It is possible to construct polygenic risk scores that account for useful amounts of variance in phenotypes by summing multiple genetic variants of small individual effect. One method that should be particularly helpful in discovering the neurobiological risk mechanisms of psychopathology is to base polygenic risk scores on the many genetic variants that all influence the same cellular function. For the ALSPAC data, functional gene group scores would be created quite easily by running computer algorithms on the existing ALSPAC SNP data.
Specific Aim 2: Hierarchical phenotypes. We may have failed to find strong genetic associations partly because psychopathology phenotypes have not been measured in ways that accurately reflect the nature of genetic risk. Heretofore, we have mostly studied one categorical mental disorder at a time. We propose to use a novel hierarchy of dimensional mental health phenotypes to optimally identify pleiotropic genetic risk variants.
Specific Aim 3: Environmental moderation and sex differences. Testing for gene-environment interactions (GxE) is not a novel strategy, but it is still controversial, greatly underused, and critically important. Therefore, we will test for GxE with prenatal and postnatal environmental variables assessed prospectively to describe their moderation of genetic associations.
B1218 - The relationship between a newly identified functional SNP in the galanin promoter and phenotypic variation in ALSPAC - 29/07/2011
This proposal will study the association of the rs2513280 SNP (which is well imputed in the existing ALSPAC GWAS data set) with a range of phenotypic data from the ALSPAC cohort that relate to metabolism, BMI, lipid profile, addiction, depression and anxiety.
Strategically, we see this as the beginning of an important collaboration of significant translational relevance. In the longer term we will wish to expand the study out to other cohorts available in Bristol, but also into a wider examination of other galanin-dependent phenotypes and/or other genes in the galanin signalling pathway.
B1217 - Self-harm with and without suicidal intent in school-aged children causes and consequences a 3 year follow-up of the ALSPAC cohort - 29/07/2011
We propose undertaking new data collection and analysing existing data to address the following research questions relating to self-harm in ALSPAC: 1.) What are the health and educational outcomes in children reporting self-harm with and without suicidal intent at ages 11 and 16. 2.)What is the influence of a) help-seeking, b) exposure to self-harm in friends and family, c) autobiographical memory, d) personality traits such as impulsiveness e) media/Internet exposure and f) non-suicidal self injury in mediating progression from suicidal thoughts and non-suicidal self-harm to suicide attempts from age 11 to 16 and from age 16 to 18. 3.) What are the differences and similarities between people who attempt suicide and those who carry out acts of NSSI without suicidal intent. 4.)Through the 5% subset of ALSPAC participants linked with the General Practice Research Database (GPRD) and the recent linkage of ALSPAC to Hospital Episode Statistics, determine the reliability of self-report self-harm and investigate the impact of non-response bias on observed associations. We propose undertaking the following analyses: 1.) Prospective analysis to estimate the incidence of self-harm at age 21. 2.) Prospective analysis based on the self-harm questions at age 11, to identify health and educational impacts of self harm at this age and progression of suicidal thoughts and act between ages 11 and 16. 3.) Prospective analysis based on responders to the self-harm questionnaire at age 16/17. We will assess the impact of self-harm reported at age 16/17 on mental health (CIS-R), educational and other social outcomes by age 18-21. We will compare outcomes for those participants who self-harmed with and without suicidal intent. 4.) We will conduct further prospective analysis to identify social, psychological and educational predictors of self-harm at age 16/17 and 21. 5.) We will explore the reliability of self-report self-harm and investigate the impact of non-response bias on observed associations by identifying a) whether episodes of self-harm identified through HES and GPRD linkage were reported by participants, b) rates of self-harmamongst non-responders to clinics/ questionnaires.
B1214 - Investigation of the correlates and consequences of observed parent-child interactions - 29/07/2011
We propose a series of projects that will be conducted by 5 Clinical Psychology Doctorate students from Exeter University. The projects will all be investigating parent sensitivity during the observed mother-infant interactions at the 12 month Child in Focus Clinic.
Projects 1, 2 & 3: For this proposal we would like to investigate the influence of maternal sensitivity at both 12 months and 61 months on the child's emotional, behavioural and social development looking at early measures of temperament, social cognition and behaviour. In addition ALSPAC provides measures of infant development and temperament at 6 months and therefore before maternal sensitivity was measured. This will allow us to also explore whether an association between maternal sensitivity at 12 months and later infant development is explained by more highly developed or more positively tempered infants evoking more positive maternal behaviour.
Project 4: It is not known whether more sensitive mothers choose to breastfeed or whether the act of breastfeeding impacts on maternal sensitivity. We will be able to further investigate this question by looking at whether it is women's intention to breastfeed during pregnancy or how much they actually breastfed that is associated with maternal sensitivity.
Project 5: In contrast to the wealth of literature on maternal sensitivity very little is known about the nature of father's sensitivity towards their infants. At the child in focus clinic a proportion of fathers brought their infants and participated in the parent-infant interaction instead of mothers. We would compare this to a sample of mother-infant interactions matched on socio-demographic variables from questionnaires administered at different stages. we would investigate whether father's sensitivity is associated with infant developmental measures as is the case for mothers. We will also compare the observed interactions withquestionnaire data on parenting from fathers and mothers.
B1220 - The Cohorts and Longitudinal Studies Enhancement Resource CLOSER - 28/07/2011
Some of the most important studies of people's lives in the UK, including the University of Bristol Children of the 90s study (ALSPAC), will be brought together in a national centre of excellence thanks to a £5 million project launched this week by the Economic and Social Research Council (ESRC) and the Medical Research Council (MRC).
The Cohorts and Longitudinal Studies Enhancement Resource (CLOSER) project will enable research-ers make better use of the data from nine of the country's leading studies with participants born as early as 1911 and as recently as 2007.
The UK is home to the largest and longest-running longitudinal studies in the world, this world-leading initiative will pay a vital role in maximising the use, value and impact of these studies both within the UK and abroad.
Professor Jane Elliott from the Institute of Education in London will lead a team to establish the na-tional centre of excellence across the nine longitudinal studies. ALSPAC will be represented by its ex-ecutive director, Lynn Molloy and its head of laboratories, Dr Sue Ring.
Strengthening the links between these studies will allow researchers, policymakers and others to make much better use of the rich and detailed data on people's lives gathered over many years in the UK. Repeating the same longitudinal analysis across a number of studies allows researchers to test whether results are robust, and how they are changed by the context in which data has been collected.
Cross-cohort analysis helps the understanding of changes in society and how policy impacts on peo-ple's lives. For example, understanding the background to issues such as the rise in obesity and the stagnation or decline in social mobility requires longitudinal data collected from several generations of people.
A major element of CLOSER will be a single tool that enables researchers to find the information they need for their analyses across all the cohort and longitudinal studies involved. The search platform will be designed for use by a wide range of users with very different levels of experience in data manage-ment, analysis and discovery. It will provide a simple, intuitive interface, encouraging more researchers to use longitudinal data and thereby stimulating interdisciplinary research.
CLOSER will also offer a programme of training which will enable a whole new generation of re-searchers and policymakers to use these rich and complex longitudinal data to help inform key areas such as education and health. It is a £5-million initiative over five years and part of the larger £33.5 million Birth Cohort Facility Project which includes the new birth cohort study - Life Study.
The Universities and Science Minister, David Willetts, said: "Cohort studies give unparalleled insights into people's lives and their life chances. This excellent new facility will make that easier than ever before."
Lynn Molloy, Executive Director of the University of Bristol's ALSPAC, said: "CLOSER is a fantastic opportunity for UK-based cohort studies to work together to better utilize the research arising from these studies. I am delighted that ALSPAC is involved in this groundbreaking project."
Professor Elliott, Director of the Centre for Longitudinal Studies, added: "I am delighted to be given this opportunity to lead this pioneering initiative which will help researchers to address key questions - for example about the factors that are important for children's wellbeing, and about behaviours and experiences that influence health in later life."
B1208 - Effects of early pubertal timing on risk for depression and alcohol use in young women - 28/07/2011
In order to resolve the pubertal status versus timing issue, studies would need to follow girls through puberty to the end to examine whether there are long lasting effects of early puberty on risk for depression.
AIM 1: To examine the association between timing of puberty and depressive symptoms / depression in girls in late adolescence.
AIM 2: To examine the association between early puberty in girls and alcohol use.
AIM 3: To examine the association between depressive symptoms in girls during adolescence and risk for alcohol misuse.
AIM 4: To examine the longer-term impact of early puberty on alcohol use in young women.
We also propose to use recently identified SNPs for early puberty to investigate whether a mendelian randomisation approach will help to determine whether early puberty has a causal relationship with the outcomes.
Outcome variables: Depression, depressive symptoms and alcohol use
Variables that we proposed to examine as potential mediating variables or confounders: Self-image, body image, sexual behaviour, conduct problems, parental supervision, parent-child relationship, IQ, indicators of socioeconomic disadvantage, maternal characteristics (e.g. maternal depression).
B1212 - R-SPONDIN 3 signalling as a link between obesity phenotypes and cardiovascular disease - 21/07/2011
We plan to examine the potential mechanism(s) whereby RSPO3 regulates the functional properties of adipose precursors and thereby regional adipose depot size and function. Manipulation of RSPO3 expression and/or activity to achieve a more beneficial pattern of fat distribution and/or modulate adipose tissue function offers an alternative approach to treat obesity associated cardio-metabolic complications.
To firmly establish the genetic association between RSPO3 and (a) waist-circumference (b) WHR and (c) metabolic profile we seek to genotype the entire OBB and replicate our findings in an independent cohort (mothers of the ALSPAC cohort). In order to achieve this we require ?50 ng of DNA (at 5-10 ng/mcl conc.) to genotype the 3 relevant SNPs. In addition we require anthropometric and biochemical data as described above.
B1211 - Deriving a measure of maturation status based on percentage of predicted adult stature PhD - 21/07/2011
Background: Pubertal status is an important determinant of many health-related behaviours and outcomes. It is therefore an exposure of interest for numerous outcomes, as well as being a confounder in many exposure. A non-invasive method of assessing maturation status based on the percentage of adult stature (predicted from parental height) that a child has attained has been developed. The percentage of predicted final height for an individual can be compared with age- and sex-specific references to give z-scores, which can then be used to assess the degree to which a child is advanced or delayed in maturation status. The aim of this project is to apply this method to data from participants of the Avon Longitudinal Study of Parents and Children (ALSPAC). Comparison of these measures with other puberty assessments: age of menarche for girls, and for boys and girls, assessments of puberty based on questionnaires in which the child's parent or guardian was asked to identify which line-drawing most closely resembled the child. This method describes 'Tanner'stages ranging between I and V, with I being least sexually mature. Since heights at age 18 are also now available for the ALSPAC cohort, we can compare the predicted final heights with the actual measured heights at age 18.
B1210 - Exploring relationships between facial shape and bone development PhD - 21/07/2011
Background: Rare monogenic disorders such as sclerosteosis have been reported to lead to an increase in bone mass, in association with abnormal facial features such as mandibular overgrowth (1). We have recently observed a similar association in adults identified within the population as having elevated bone mineral density (BMD) (2). More detailed analysis of this cohort of high bone mass subjects revealed increased thickness and circumference of cortical bone, which might conceivably also be related to growth of skull bones. Since facial growth is largely complete by age 15, particularly in girls, analysing associations between indices of face shape obtained in the ALSPAC cohort at age 15, and bone parameters ascertained at the same age, may shed important light on relationships between skeletal development and facial appearance.
Exposure variables: The primary exposure variables will be indices obtained from pQCT of the mid-tibia at age 15, particularly cortical thickness, cortical density, and periosteal circumference. Further exposure variables will include bone measures derived from total body DXA scans performed at the same time, including total body bone area and BMD, and skull area and BMD. Whether bone measures at earlier time points predict subsequent facial features will also be explored, based on total body DXA scans obtained at earlier time points.
Outcome measures: Facial shells, consisting of in excess of 40,000 points, have been generated in 4747 children in ALSPAC at 15 years of age, from which outcome variables for this study have been derived. These comprise 22 distinct facial landmarks, including the relative prominence (z-distance) of the pogonion, nasion and glabella, and thewidth (x-distance) of the chin and bridge of the nose.
B1191 - Epigenetic marks at birth maternal pre-pregnancy obesity and weight gain during pregnancy - 21/07/2011
We will investigate if maternal overweight/obesity, variation in GWG, and/or gestational diabetes/glycosuria are related to offspring outcomes and if so, whether this correlates with epigenetic changes. One important concern when studying this is the significance residual confounding specially with socio-economic factors. A Mendelian randomization approach can further address the issue of confounding by using genetic variants, reliably associated with adiposity or glucose metabolism, as instrumental variables for its their causal intrauterine effect. For this purpose, we propose to use single nucleotide polymorphisms that have shown strong associations in previous GWAS with adiposity, or fasting glucose. To have the greatest statistical power we will combine the SNPs into at-risk allele scores. As potential offspring outcomes that can be affected by maternal overweight/obesity, GWG and/or gestational diabetes we will select those phenotypes that have been reported to be associated with adiposity during pregnancy including birth outcomes, child adiposity and vascular traits, and respiratory and neurodevelopment phenotypes. We will take into account the effect of potential covariantes. In addition, paternal body mass index will be used as a control. Our main objective will be to investigate the association between maternal overweight/obesity, variation in GWG and/or gestational diabetes/glycosuria with offspring DNA methylation patterns. If evidence of DNA methylation changes in offspring exposed to developmental over-nutrition is found, a secondary objective will be to assess the association between DNA methylation changes with the selected offspring's outcomes. These analyses could reveal potential biological pathways linking the intrauterine environment of over-nutrition with the development of adversephenotypes in offspring later in life.
B1201 - Pathways to resilience in children born to depressed mothers - 18/07/2011
We have four aims. First, to identify those children born to depressed mothers in the ALSPAC Study who would be classified as resilient on the basis of their scores on the SDQ in middle childhood. Second, to study the factors in early life associated with resilience in this group. Third to investigate the role of quality of early maternal care on development of resilience. Fourth, to identify those early factors involved in resilience which may be potentially amenable to intervention. Specific research questions / study objectives: 1.)When mothers are grouped on severity and duration of depression, what proportion of children born to depressed mothers are classed as resilient on the basis of the median total score on the Strengths and Difficulties Questionnaire (SDQ) administered at ages 8 and 11 by parents and teachers? 2.) Is this concept of resilience generalisable to other outcomes? How do resilient children, non-resilient children, and children of non-depressed mothers compare on other components of adaptive functioning measured when the children were ages 8 to 11 years? Do boys from the resilient group show a different pattern to girls? 3.) How do resilient children compare with non-resilient children and children of non-depressed mothers for the following factors: Exposure to major stressors, Quality of maternal care in the first year, Modifiable factors in the first year e.g. remaining with partner, relationship with partner, parental support, social support, neighbourhood characteristics, financial resources, breastfeeding.4.)Do the modifiable factors in 4 above act through altering the quality of maternal care in the first year or independently? Which aspects of quality of maternal care are important?
B1196 - Prenatal exposure to selenium mercury and lead and childhood atopic and respiratory outcomes - 18/07/2011
Aims: To investigate associations between maternal blood concentrations of selenium, mercury and lead and childhood respiratory and atopic outcomes, and interactions with paracetamol and GST, GCL and GPx polymorphisms. Hypotheses:1) Maternal mercury and lead concentrations in blood in pregnancy are positively associated with atopic outcomes in the offspring.2) Maternal mercury may partly explain the associations of higher socioeconomic status and birth order/parity with childhood atopy.3) Associations with mercury will be modified by GST/GCLC variants in the mother and child, by maternal blood selenium and by paracetamol use in pregnancy. Also, paracetamol effects on asthma and IgE will be modified by mercury exposure.4) Maternal blood concentrations of selenium will be positively associated with wheezing and asthma in the offspring and this relation will be modified by the GPx4 gene variant in mother and child and also by mercury concentrations and by maternal intake of vitamin E.5) A high Hg/Se ratio will be positively associated with atopy; a high Se/Hg ratio will be negatively associated with wheezing and asthma. Primary exposures (data requested): Maternal blood concentrations of Se, Hg and Pb in pregnancy. Outcomes of interest: childhood respiratory and atopic outcomes (data already available). Prenatal and postnatal confounders (data already available).
B1209 - What is the role of rare mitochondrial DNA variants in common human diseases - 14/07/2011
Given that the whole mitochondrial genome is involved in the synthesis of OXPHOS proteins, it is plausible that several rare variants could add together to compromise ATP production and thus contribute to human disease. We aim to test this hypothesis in several disease cohorts and to compare these data to the ALSPAC control cohorts. We will use NGS to determine the frequency of mtDNA variants present at MAFgreater than 1% in at least four diseases (Parkinson's disease, ischaemic stroke, sepsis and osteoarthritis) for which we have the strongest preliminary data, and then five additional human diseases where mtDNA variants have been implicated (hypertension, Type 2 diabetes, coronary artery disease, Alzheimer's disease, primary biliary cirrhosis), depending on the degree of pooling that can be reliably achieved. For each disease we will study 2000 cases, and compare the data to both control cohorts to identify 200 variants most strongly associated with each specific disease. We will use iPLEX Sequenom MassArray to individually genotype both the discovery and an equal-sized replication cohort for each disease. Individual genotyping of both the discovery and replication cohort will enable the analysis of haplotypes and/or clusters of potentially related SNPs, which is not possible for the pooled data. Our power calculation indicate that this experimental design will have greater than 80% power to detect an association at Pless than 0.0001 for a single allele at MAFgreater than 6% with a relative risk (RR) of greater than 1.6; at a MAFgreater than 1% for a RRgreater than 3
B1203 - Genome-Wide Association Study of BMI Trajectories Across Childhood - 14/07/2011
The primary aim of this study was to investigate the association between genetic variants and childhood growth trajectories across the Early Growth Genetics (EGG) consortium. BMI trajectories in childhood tend to be difficult to model due to the complexities of growth. To conduct analysis on a genome-wide scale, the analysis of each SNP must be computationally efficient. Additional methods for analysing these data are currently being investigated including the Super Imposition by Translation and Rotation (SITAR) method, an extension to the LME based on a multivariate t distribution to account for the increasing heteroscedasity and a semi-parametric mixed model. Variables of interest: * BMI at all available time points between 1 and 16 years of age * Age and Sex for adjustment and stratification in analytic models * Singleton/Multiple birth status and ethnicity for exclusion of related individuals and non-Caucasians from analysis * 6 previously published adult BMI associated polymorphisms to assess the ability to detect genetic associations using the different modelling frameworks.
Analyses: (Inclusions/Exclusions: Include only singletons, Caucasian ethnicity only, BMI measured at 2 or more time points between 1 and 16 years.) Stage One: Analysis steps: 1. Run analysis of chosen longitudinal methods in all three cohorts 2. Include each BMI associated SNPs individually to the models in all three cohorts. 3. Compare methods focusing particularly on model fit, computational time, generalizability and ability to detect genetic associations. Choose most appropriate method for further analysis. 4. send chosen analyst from each cohort the code to conduct GWAS analysis using longitudinal method or the summary statistics derived from longitudinal method for analysis as a quantitative trait against the GWAS. 5. Compare the top genes from the meta-analysis of the GWAS results from the three cohorts to those detected in the "GWAS on infant and early childhood growth parameters until age 7 years" study to ensure we are investigating two separate phenotypes. Stage Two: Once the feasibility of pursuing this proposal and the proposal named above as independent investigations has been determined using these three cohorts, we will extend this analytic plan to other cohorts willing to participate and with relevant data in EGG. Stage Three: The most strongly statistically significant genetic loci will be followed-up with more intensive analyses using other phenotypes indicating obesity (e.g. waist circumference and waist-to-hip ratio) and other methods developed during previous work modelling BMI trajectories in EGG cohorts
B1200 - The Inheritance of Political and Social Beliefs - 14/07/2011
It is proposed to collect data on individuals' political views and social attitudes such as altruism, or trust and broad measures of personality characteristics. It is hoped that this will allow a first glimpse at how our early environment and genetics, combine with current circumstances to determine our beliefs. We propose asking questions similar to those below. Ideally, all questions would be asked of both parents and their children. The collation of data on social attitudes would also be extremely worthwhile in itself. Using forms of question that have been widely used in other surveys will facilitate comparability with other surveys/studies. 1. Measures of Political Ideology a. Left-Right Scale question similar to used in Eurobarometer/WVS/BSA ) b. Libertarian-Authoritarian Scale - BSA 2. Political Behaviour Questions, E.G: a. Did you vote in the last general/European/local election? If so who did you vote for? b. Do you feel that one party tends to represent your views at the national/European/local level? If so which? c. Do you belong to a political party, trade union, environmental organisation, etc.? d. Have you engaged in any of the following types of political action? Boycotts/ Petitions/Rallies/etc. .3. More fundamental questions about political beliefs - belief in the power of government (Can government be an effective force for good, is government necessary, taxation is justifiable, progressive taxation is justified.) 4. Trust. Generally speaking, would you say that most people can be trusted or that you need to be very careful in dealing with people? Thinking just about people you know, would you say that most of them can be trusted...5. Other Social Attitudes (Altruism, Inequality-Aversion, etc.) , Religosity6. Big 5 personality traits - 44 or 10.
B1205 - The role of maternal antenatal diet and early childhood diet in the aetiology of ADHD DCD and Dyslexia - 07/07/2011
Investigate the role of antenatal dietary factors and blood levels of fatty acids in relation to the development of ADHD, DCD and dyslexia using data from ALSPAC. In addition we will investigate the role of these dietary factors on the continuous developmental traits of inattention and hyperactivity, motor coordination and reading skills. Measures of diet and fatty acids from ALSPAC used in this analysis will be: 1.Dietary data collected by food frequency questionnaire at 32 weeks pregnancy. 2. Maternal prenatal red blood cell fatty acids. 3. Duration of breast feeding assessed by maternally completed questionnaire at 6 months. 4. Child blood fatty acid levels available at birth (cord blood) and at 7 years. The final analysis will assess the role of fatty acids in the aetiology of children with complex overlapping difficulties in attention, poor motor coordination, poor reading skills, speech and language and social communication difficulties. The study will involve A.) a comprehensive literature review of all previous research looking at the role of fatty acids in the aetiology of ADHD, DCD and dyslexia B) Multivariate linear regression models will be used to analyse each of the dietary factors for the traits of attention, motor coordination and reading skills. C) Further analyses using multivariate logistic models will assess the role of these dietary factors in regard to (a) the extreme tail (10th centile) of each distribution, and (b) the diagnoses of ADHD, DCD and dyslexia.
B1188 - Genome-wide association study on infant and early childhood growth parameters - 07/07/2011
The growth trajectory early in infancy and during childhood has been found pivotal in the early determination of adulthood metabolic health. In fact, early divergences from the normal growth curve at critical windows during infancy and later childhood are frequently associated with a higher incidence of obesity and impaired metabolic health in adulthood (Dietz WH, AJCN 1994). GWA studies have revealed several genetic variants associated with adult anthropometric measures such as weight and BMI. The main objective of this study to investigate whether phenotypes such as peak weight velocities (PWV) and timing of Adiposity Rebound(AR) derived from longitudinal data are associated with early adiposity (Sovio et al, PLoS Genet 2011). Since the effects of common variants on these traits are small or moderate, we propose a GWAS meta-analysis approach in the EGG cohorts that have both GWA data and frequent enough height and weight measurements available in infancy and/or middle childhood. The specific age window that will be considered: (1) infancy 0-2 years and (2) early childhood from 1.5-7 years. The phenotypes which are calculated are: peak weight velocity (PWV) in infancy, BMI and Age at Adiposity Peak (AP) and Adiposity rebound (AR). In ALSPAC, we propose calculation of PWV and BMI AP as it has data available on infant weight at birth, 6 weeks, 9 months and 18 months. The initial primary GWAS on 4 cohorts has been conducted within EGG and we have identified 8 SNPs reaching GWAS significance which are taken forward to replication stage within other available cohorts.
B1195 - Genetic association study on Fractional exhaled Nictric Oxide FeNO - 30/06/2011
Not available
B1194 - Neighbourhood characteristics and respiratory and atopy outcomes in children - 30/06/2011
Not available
B1172 - Y chromosome and mitochondrial DNA haplogroups to inform genetic epidemiological analyses - 25/06/2011
ALSPAC is an ideal cohort to conduct this study because all the required variables are already available. These include the genotypes for Y chromosome and mitochondrial DNA, available from 23 and me for all 10,000 children. ALSPAC includes also genome-wide information that has been used for various studies already published by members of our team. These studies represent perfect controls in order to compare our novel approach with conventional approaches.