Proposal summaries
B1392 - Dissection of ZNF804A association with complex psychiatric disorders - 05/07/2012
Building on the work of an existing, MRC-funded project examining the contributions of the ZNF804A zinc finger transcription factor locus to brain function in animal models, the work proposed here aims to apply recall studies to expand this effort to detailed examination of parallel human traits, combining the expertise and methods developed in MRC CAiTE with Cardiff's expertise in neuropsychiatric genetics and Bristol/Harvard's expertise in sleep neurophysiology. Crucial to the motivation of this study are the observations that (1) variation at the ZNF804A locus is associated with schizophrenia and related disorders risk and (2) that patients present with abnormalities in neural oscillations during sleep, which in turn cause or reflect cognitive deficits that respond poorly to current therapies. Since distinct patterns of oscillatory neural activity during sleep reflect functioning of well-defined neural circuits, this presents an opportunity to link ZNF804A variants to brain function and thereby rationalize future therapeutic design.
B1391 - The neurophysiological underpinnings of response to alcohol an aetiological examination of fMRI characterised physiology - 05/07/2012
Risk factors for heavy drinking operate primarily through intermediate characteristics that relate to environmental events and genetic influences to impact on the development of heavy drinking and alcohol use disorders (AUDs). One such pre-existing phenotype is low Level of Response (LR) to alcohol, where individuals who require higher doses of alcohol to achieve an effect are more likely to develop AUDs than those who react more intensely to ethanol. This trait can be measured as less alcohol-related change in positive (e.g., feeling high) and negative (e.g., feeling dizzy) subjective feelings of intoxication, hormones, and EEG measures at a given blood alcohol concentration (BAC), or as less effect per drink on a retrospective questionnaire. Low LR is seen in ~40% of the children of alcoholics, but only ~10% of controls, and the heritability of this trait measured by questionnaire is 40%-60%. Critically, LR predicts later heavy drinking and the negative impact of alcohol abuse and has been demonstrated to be an effective target for directed alcohol management intervention, yet despite its clear translational importance, the biological underpinnings of this trait have yet to be fully characterised and replicated. The proposed recall experiment will replicate novel work from collaborator MS and colleagues concerning the functional underpinnings of LR status and extend it in an independent collection (ALSPAC) with access to comprehensive genotypic data, life-course phenotypic data and prospective follow-up of alcohol related events and measures.
B1390 - Longitudinal bone health and development in adolescents with disordered eating - 05/07/2012
Objectives
1)To determine the impact of adolescent disordered eating behaviours on bone accrual and bone development throughout adolescence and young adulthood.
2) To determine the role of factors such as caloric restriction, delayed puberty, excessive exercise, gender in explaining the effect of disordered eating on bone health in adolescence.
3) To determine the impact of adolescent disordered eating behaviours on stress fractures in young adulthood.
Background
Eating disorders (ED) are chronic disorders and affect about 5-10% of the population (Hoek and Van Hoeken, 2003).
Adolescent ED and bone development: ED have a peak incidence in adolescence, a crucial time for physical and skeletal development. Pubertal years are the period in the life course when bone mass reaches its highest level. The level of bone mass attained at this age is a key determinant of long-term bone health and risk of osteoporotic fractures in later life (Ott, 1991).
Past research focusing on bone density in ED has shown that restrictive ED (such as anorexia nervosa (AN) and atypical anorexia nervosa/ Eating Disorder not otherwise specified-EDNOS) are associated with reduced bone mass. This is probably secondary to low weight, reduced fat mass and hormonal abnormalities secondary to poor nutrition (Misra, 2008; Mehler et al, 2011). Whilst recovery from the ED has been shown to lead to improvements in bone density, several studies show that bone density remains lower than in individuals who have not experienced an ED, particularly in cases where the ED onset was in adolescent years (Biller et al., 1989; Hartman et al., 2000; Wentz et al., 2007; Bolton et al., 2005).
Binge- type ED (such as bulimia nervosa and binge eating disorder) have been less well studied, and appear not to affect bone density to the same extent as restrictive ED, particularly if normal weight is maintained (Misra, 2008). However, higher fracture risk was also shown in these women compared to controls (Vestergaard et al., 2003).
Studies investigating bone density in adolescents with restrictive ED as measured by dual energy X-ray absorptiometry (DXA) have shown low bone density at the spine, hip and femoral neck (Misra, 2008); as well as reduced bone turnover. These effects are apparent in both girls and boys (Castro et al., 2002). Follow-up studies of adolescents have reported some improvement in bone density with nutritional restoration, mainly in areas of trabecular bone, such as the spine. Several studies, however, have shown fewer improvements in bone density at cortical sites despite recovery from the ED ((Herzog et al., 1993; Mika et. al, 2007). Given that the adolescent years provide a narrow window of opportunity in which to optimize bone mass accrual, disruption during these years might lead to permanent deficits.
Stress fractures:Although stress fractures are relatively uncommon, they affect as many as 15% of young women athletes and military recruits. Among females, other suspected risk factors for developing a stress fracture include disordered eating (Rosen et al, 1986) and irregular menstrual cycles, both which may result in a deficient estrogen status that can counteract the beneficial effects of exercise on bone density (Wolman et al., 1990; Lloyd et al. 2000; Bass et al.,1998).The combination of disordered eating, amenorrhea, and low bone density is characterized as the Female Athlete Triad. The recognition of the triad has served to increase awareness of bone health concerns among young female athletes (Yeager et al., 1993; Otis et al., 1997). Thus, it is extremely important to identify modifiable predictors of stress fracture so that prevention programs could be developed for high-risk populations.
Gaps in the literature:Most studies in the field to date rely on small clinical samples, and are likely to represent more severely ill subjects attending in- or out-patient services and not be generalisable to all ED. Length of follow-up has often been limited to 1-2 years. Moreover, DXA provides an overall estimate of bone mass but does not directly measure aspects like cortical thickness and cross sectional area that determine overall bone strength. Techniques like peripheral quantitative computed tomography (pQCT) can provide detailed information about cortical bone geometry and strength, but only one study to date has used this method to study bone changes in adolescents with ED (Milos et al.,2007). In light of recent finding that fat mass is an important positive determinant of cortical bone size and thickness (Sayers & Tobias, 2009), we are particularly interested in examining whether adolescent ED predicts weaker cortical bones due to reduced fat mass. More than half of adult bone calcium is acquired during adolescence and a woman's peak bone mineral density, a major determinant of her long-term risk of osteoporosis, is thought to be achieved by early adulthood. Therefore assessing bone density in young adulthood, as well as throughout adolescence, allows a better assessment of peak bone density. This additional investigation will allow a better understanding of the longitudinal effects of adolescent ED behaviours on bone development.
To our knowledge there are: no studies on a general population sample of adolescents/young adults able to link temporal relationships between disordered eating behaviours and bone development. Both would allow a clear identification of causal biological mechanisms, and take into account the role of confounders. The current lack of evidence impacts on available prevention and early treatment for patients with ED.
This study is unique in that data have already been collected prospectively and independently on bone density and ED behaviours in about 6,000 adolescents from the Avon Longitudinal Study of Parents and Children (ALSPAC). This longitudinal prospective study will allow: (1) determining precise temporal relationships between predictor (ED behaviours) and outcomes (bone density, cortical bone size and thickness, peak bone mass, and stress fractures); (2) focusing on causal biological mechanism taking into account the role of confounders (thanks to the wealth of data available in ALSPAC).
Methodology
Theoretical/conceptual framework: This is a longitudinal study, which will rely on data prospectively collected as part of the ALSPAC study. The ALSPAC study is a longitudinal prospective cohort of 14,000 mothers and their children. Women were enrolled in the study in pregnancy. Children have been followed up at regular intervals from birth up to age 18.
Research questions:do adolescent disordered eating behaviours (not only clinical ED) negatively affect bone accrual and bone development during puberty and into young adulthood, including individuals with subclinical disorders not currently viewed as being at risk? Do reductions in fat mass contribute to these deleterious effects of ED behaviours on bone development particularly those on cortical bone? This being the case, are reductions in fat mass in the context of ED behaviours particularly harmful, reflecting the fact that they are achieved by dietary restriction as opposed to by increased physical activity? What is the impact of disordered eating behaviours on peak bone mass?
Methods:
Outcomes:
1) Total DXA scans have been performed on the children/adolescents at ages: 11.5 (n = 7159), age 13.5 (n = 6147), age 15.5 (n= 5509) and age 17.5 (approximately 4000). In addition, hip DXA scans have been performed at age 13.5 and 17.5, and pQCT scans of the mid tibia at 15.5 and 17.5. Standard DXA and pQCT parameters related to bone development have been derived and will serve as the main outcomes. Data on fractures has also been collected at regular intervals.
We are seeking funding for a new wave of data collection to collect:
1. a 1-page questionnaire on stress fractures;
2. a two page questionnaire (or computerised assessment) on disordered eating behaviours and participation in exercise
3. DXA (hip and total body) and pQCT (tibia plus radius)
4. objective measurement of weight and height
Predictors:
1) Data on adolescent ED behaviours have been collected at age 13, 14, 16, and 18 adolescents
Other explanatory variables (mediators and/or confounders):
1)- Data are also available on pubertal timing and anthropometric measures at all the above ages on ~6,000 adolescents.
-Total body fat and lean mass as measured by total body DXA
-Physical activity as measured in the children by accelerometry at multiple time points
-Detailed information on adolescent diet using a combination of diet diaries and food frequency questionnaires
-Extensive information on socio economic status
Data collection: we envisage the new data collection can be part of an ALSPAC clinic, alternatively we will select individuals on the basis of their exposure (any disordered eating in adolescence, N=600-800) and unexposed individuals (no disordered eating in adolescence, N=600-800) to assess.
Analyses: Univariate and multivariate logistic models will be used to determine the effect of relevant predictors on outcomes. Longitudinal modelling will be used for longitudinal repeated data and to model hypothesised relationships.
B1389 - Oral health at age 17 and associated factors - 21/06/2012
Aims
To analyse the 17 year old dental questionnaire data.
To create a body of work to support a future grant application for further dental work.
Analysis of 17 year old questionnaire
The first two pieces of work will be to look at predictors of dental anxiety and uptake of orthodontic care.
It has been suggested that dental anxiety may be the result of two different mechanisms either underlying constitutional vulnerability or conditioning i.e. endogenous or exogenous. Conditioning may be the result of direct experience, modelling or information exchange. This study seeks to investigate predictors of dental anxiety at age 17 in the ALSPAC cohort, we will use data from previous surveys to determine whether direct conditioning or modelling are important for the development of anxiety or whether endogenous underlying constitutional vulnerability is more important. Outcome will be whether the individual is dentally anxious or not. Exposure data will be previous dental treatment recorded at age 7.5 years and 10.5 years. Confounders considered in the analysis will include gender, age at time of outcome, maternal age at birth, maternal education, SES, child/adolescent general anxiety and maternal general anxiety.
Treatment with braces (orthodontic care) to correct crooked teeth (malocclusion) is provided by the NHS free of charge for those children who are considered to need it. However it is known that there are inequalities in the provision of orthodontic care with children from deprived areas less likely to receive care. Moreover studies have suggested that rather than the severity of the malocclusion other factors are more important predictors of uptake. Parental concerns and attitudes, dental attendance patterns of child and mother and the child's dental health have all been associated with the receipt of orthodontic care. For the orthodontic care project the intention is to use questionnaire data on attitudes to and experiences of oral health care and dental treatment from previous questionnaires to investigate the association between childhood factors and the offer and uptake of orthodontic care in adolescence.
The plan for further work will be around the experience of mouth ulcers and facial pain, trauma to teeth, oral hygiene, perceptions of oral health and attitudes to prevention of dental caries and periodontal disease.
Hypotheses
1. Dental anxiety in adolescents is associated with dental treatment received in childhood.
2. Receipt of orthodontic care is associated with parental concerns and attitudes and dental attendance patterns rather than solely the need for care as measured by the severity of malocclusion.
Variables
1. Dental anxiety
Outcome: Dental anxiety at age 17
Exposures: (1) Ever had a filling
(
2) Ever had an extraction under GA
Confounders: Gender, age at time of outcome measurement, maternal age, parity, maternal education, SES, child/adolescent general anxiety, maternal general anxiety
2. Orthodontic care
Outcome: Orthodontic experience at age 17
Exposures: (1) attitudes to appearance of teeth age 128 months
(2) dental attendance pattern age 128 months
Confounders: Gender, age at time of outcome measurement, maternal age, parity, maternal education, SES,
Perform regression analyses to investigate the association between childhood factors and the offer / uptake of orthodontic care in adolescence, both with and without adjustment for confounders
Data will be supplied by Dr Sam Leary and a datset will not need to be generated by ALSPAC team.
B1387 - GWAS on asthma and hay fever - 21/06/2012
Aim: To carry out a genome-wide association study that takes into account not just lifetime asthma status but also the presence of hayfever.
Hypotheses: The power of asthma genome-wide association studies (GWAS) can be improved -- and so new susceptibility loci can be identified -- by defining cases and controls based on diagnostic criteria that are more refined than a simple doctor diagnosis of asthma. We hypothesise that the presence of hayfever in addition to asthma defines a subgroup of asthma patients that will help map new loci for allergic disease.
Independent variable: Individual genotyped or imputed SNPs located in the autosomes or X-chromosome, coded as allelic dosage.
Dependent variable: Binary phenotype (ie case-control status) with affected individuals defined as those individuals who reported in any of the available ALSPAC surveys (7.5 and 14 years) to have been diagnosed by a doctor with asthma *AND* reported in any of the available surveys (11 and 14 years) to have hayfever. So lifetime self-reported asthmatics with hayfever. Unaffected individuals are defined as those individuals who never reported in any survey to have asthma or hayfever.
Confounding variable: None.
Analysis plan: Perform association analysis of SNP dosage after applying standard QC filters (eg. MAFgreater than 1%, HW P-value greater than 10-6, call rate greater than 95%, imputation info/r2 greater than =0.3) and excluding samples of non-European ancestry. Analyse males and females separately and include SNPs on the autosomes and the X-chromosome.
B1269 - Salivary microbiome as a sensor for dietary exposures and disease risk a next generation sequencing approach - 21/06/2012
Background: The human microbiome comprises the microbial community inhabiting the human body. The total number of unique genes represented by the microbiome is thought to be orders of magnitude greater than the content of the human genome [1]. The composition of the microbiome has high potential importance as both a marker for disease risk (eg gut microbiome and colorectal cancer risk [2]) and potentially as a modifiable risk factor for disease. This project will investigate the role of the salivary microbiome in health and disease and its potential as a measure of dietary exposures and disease risk.
Aims: (1) To measure the salivary microbiome in saliva samples from the ALSPAC cohort using next generation sequencing. (2) To explore the potential of using the salivary microbiome as a sensor for dietary composition. (3) To analyse salivary microbiome associations with health outcomes.
Hypotheses: (1) That salivary microbiome composition (both combination of species and relative proportions) responds to dietary composition. (2) That salivary microbiome composition may serve as a useful indicator of dietary composition for research purposes. (3) That salivary microbiome may serve as a marker of risk for diet-influenced health outcomes. (4) That salivary microbiome is itself a risk factor for oral/dental disease.
Exposure variables: Diet data (hypotheses 1, 2 & 3) and salivary microbiome (hypotheses 3 & 4). Outcome variables: Salivary microbiome (hypotheses 1 & 2), blood lipids & anthropometry (hypothesis 3) and variables on dental health (hypothesis 4). Potential confounding variables: Diet, genetic variants and medications.
B1383 - Childhood antisocial behaviour and cardiometabolic risk - 07/06/2012
This proposal will examine the prospective association between antisocial behavior in childhood with increased cardiometabolic risk in adolescence.
Specific aims:
1. To test whether childhood psychopathology, including antisocial behavior and conduct disorder predict higher cardiometabolic risk in adolescence as indicated by higher central obesity, hypertension, glucose intolerance, and high levels of inflammation markers.
2. To examine whether a prospective association between conduct disorder in childhood and cardiometabolic risk in adolescence varies by gender.
3.To examine whether a prospective association between conduct disorder in childhood and cardiometabolic risk in adolescence is modified by comorbidity with depression.
Exposure variables: Antisocial behavior, conduct disorder in childhood
Outcome variables: Blood presure, BMI, central adiposity, glucose intolerance, lipids profile, CRP, IL6 at ages 14-16
Covariates (confounders and effect modifiers): Depression, trauma, emotional problems, social class, IQ, parenting, psychosocial stress in pregnancy, parental history of psychiatric disorders and substance use, parental history of cardiometabolic disorders.
B1382 - The role of nutrition and dietary patterns in suicidal ideation during pregnancy - 07/06/2012
A longitudinal study starting in pregnancy is needed in order to determine if dietary patterns, or fatty acid deficiencies or excesses, increase risk of self harm and significant symptoms of anxiety in the perinatal period. Fatty acid compositional data from mothers and from umbilical cord has already been provided. Within this population, minor alleles of the FADS 1-2 gene complex have been shown to associate with functional deficits in fatty acid metabolism corresponding to the delta 5 and delta 6 desaturases. Dietary patterns covary with essential fatty acid status and may be critical determinants. These fatty acids act as precursors for endogenous cannabinoids, which are implicated in depression anxiety and suicideal behaviors. Gene variants in the endocannabinoid pathway will be evaluated for association with self harm phenotypes. Data characterizing self harm phenotypes are available for development. No other study has this complement of datasets in a large well characterized representative population. This work is a continuation of analysis of existing data in project B275.
B1381 - Associations between early parenting parental monitoring and adolescent risk behaviour - 07/06/2012
Aims
1) To explore associations between early parenting and parental knowledge/monitoring of teenage behaviour.
2) To investigate associations between parenting and adolescent risk behaviour, with a view to establishing whether parental knowledge/monitoring mediates any associations between early parenting and adolescent risk involvement.
Background
Parental monitoring and knowledge of teenage behaviour have been widely identified as important protective elements limiting teenage risk involvement [1-8]. However, there is no consensus on processes covered by the terms parental knowledge or monitoring. Stattin and Kerr's work gave primacy to parental knowledge, emphasising the key role of children's disclosure of information [9-11]. Other work has indicated that parent-led behaviours, such as parental solicitation of information and rule-setting, may also be involved [12-14].
Comparatively little is known about what leads some parents to have lower levels of knowledge about their teenagers, or to monitor their children less attentively. A recent review of the relationship between parental monitoring and knowledge and conduct problems [15] has called for further research in this area. This review identified three main groups of possible antecedents to parental monitoring and knowledge: contextual, child characteristics and aspects of early parenting. Contextual factors influencing the level of monitoring/knowledge include the child's gender, family status, SES, ethnicity and neighbourhood; while child characteristics include early conduct problems, early antisocial behaviour and a difficult or "resistant to control" temperament. Both groups of factors have been relatively well studied. The focus of the current study is on the third group of antecedents, early parenting.
Various aspects of the parent-child relationship (parental trust in their child, authoritative parenting style, parental sensitivity/responsiveness) and time spent in family activities have been found to be associated with greater parental knowledge or teenage disclosure, but these have been studied only in teenagers [12, 13, 16-19]. Little is known about how parenting of young children may relate to parental monitoring and knowledge of teenagers. Two (related) studies have suggested the importance of early "proactive" parenting: averting potential problems in early childhood before they become entrenched [20, 21]. While anticipating behavioural problems seems to be a useful parental strategy that may lay foundations for successful monitoring of teenagers, the teenage research suggests additional qualities related to early parent-child connectedness and behaviour management may also be important.
Hypotheses:
1. Early parent-child connectedness and behaviour management will be associated with (respectively) greater teenage disclosure of information and greater parental control of a teenager's behaviour.
2. Teenage disclosure and parental control will both be associated with teenage risk involvement.
3. Early parenting will be associated with teenage risk, directly and/or indirectly via parental knowledge and monitoring.
Research using ALSPAC data set
Outcome measures
Stattin and Kerr measures of parental knowledge, parental solicitation, parental control and child disclosure were collected from the 13-year old clinic sample and from their parents. Child-reported teenage risk behaviour (antisocial behaviour, substance use and sexual behaviour) was collected from the age 15 clinic sample and questionnaires at a comparable age.
Main exposures
Measures of early parenting were collected from mothers at ages 2 1/2, 3 1/2 and 6 years, covering important aspects of parenting such as connection, conflict, autonomy, rule-setting, and discipline.
Potential confounders
Likely important confounders of associations between early parenting and parental monitoring and knowledge of teenagers include contextual factors (gender, SES, ethnic group, and family status), and childhood behavioural problems, risky friendships and involvement in antisocial behaviour. Maternal mental health, parental substance use, quality of partner relationship and child pubertal development will also be explored as potentially important confounders of associations between early parenting and adolescent risk outcomes.
References
1. Hoeve, M., et al., The Relationship Between Parenting and Delinquency: A Meta-analysis. Journal of Abnormal Child Psychology, 2009. 37(6): p. 749-775.
2. Dishion, T.J. and R.J. McMahon, Parental Monitoring and the Prevention of Child and Adolescent Problem Behavior: A Conceptual and Empirical Formulation. Clinical Child and Family Psychology Review, 1998. 1(1): p. 61-75.
3. Li, X.M., S. Feigelman, and B. Stanton, Perceived parental monitoring and health risk behaviors among urban low-income African-American children and adolescents. Journal of Adolescent Health, 2000. 27(1): p. 43-48.
4. DiClemente, R.J., et al., Parental monitoring: Association with adolescents' risk behaviors. Pediatrics, 2001. 107(6): p. 1363-1368.
5. Boyer, T.W., The development of risk-taking: A multi-perspective review. Developmental Review, 2006. 26(3): p. 291-345.
6. Li, X.M., B. Stanton, and S. Feigelman, Impact of perceived parental monitoring on adolescent risk behavior over 4 years. Journal of Adolescent Health, 2000. 27(1): p. 49-56.
7. Huebner, A.J. and L.W. Howell, Examining the relationship between adolescent sexual risk- taking and perceptions of monitoring, communication, and parenting styles. Journal of Adolescent Health, 2003. 33(2): p. 71-78.
8. Rai, A.A., et al., Relative influences of perceived parental monitoring and perceived peer involvement on adolescent risk behaviors: An analysis of six cross-sectional data sets. Journal of Adolescent Health, 2003. 33(2): p. 108-118.
9. Stattin, H. and M. Kerr, Parental monitoring: A reinterpretation. Child Development, 2000. 71(4): p. 1072-1085.
10. Kerr, M. and H. Stattin, What parents know, how they know it, and several forms of adolescent adjustment: Further support for a reinterpretation of monitoring. Developmental Psychology, 2000. 36(3): p. 366-380.
11. Kerr, M., H. Stattin, and W.J. Burk, A Reinterpretation of Parental Monitoring in Longitudinal Perspective. Journal of Research on Adolescence, 2010. 20(1): p. 39-64.
12. Fletcher, A.C., L. Steinberg, and M. Williams-Wheeler, Parental influences on adolescent problem behavior: Revisiting Stattin and Kerr. Child Development, 2004. 75(3): p. 781-796.
13. Soenens, B., et al., Parenting and adolescent problem behavior: An integrated model with adolescent self-disclosure and perceived parental knowledge as intervening variables. Developmental Psychology, 2006. 42(2): p. 305-318.
14. Wight, D., L. Williamson, and M. Henderson, Parental influences on young people's sexual behaviour: A longitudinal analysis. Journal of Adolescence, 2006. 29(4): p. 473-494.
15. Racz, S.J. and R.J. McMahon, The relationship between parental knowledge and monitoring and child and adolescent conduct problems: a 10-year update. Clin Child Fam Psychol Rev, 2011. 14(4): p. 377-98.
16. Smetana, J.G., et al., Disclosure and secrecy in adolescent-parent relationships. Child Development, 2006. 77(1): p. 201-217.
17. Keijsers, L., et al., Reciprocal Effects Between Parental Solicitation, Parental Control, Adolescent Disclosure, and Adolescent Delinquency. Journal of Research on Adolescence, 2010. 20(1): p. 88-113.
18. Willoughby, T. and C. Hamza, A Longitudinal Examination of the Bidirectional Associations Among Perceived Parenting Behaviors, Adolescent Disclosure and Problem Behavior Across the High School Years. Journal of Youth and Adolescence, 2011. 40(4): p. 463-478.
19. Darling, N., et al., Predictors of adolescents' disclosure to parents and perceived parental knowledge: Between- and within-person differences. Journal of Youth and Adolescence, 2006. 35(4): p. 667-678.
20. Pettit, G.S., et al., Predicting the developmental course of mother-reported monitoring across childhood and adolescence from early proactive parenting, child temperament, and parents' worries. Journal of Family Psychology, 2007. 21(2): p. 206-217.
21. Pettit, G.S., et al., Antecedents and Behavior-Problem Outcomes of Parental Monitoring and Psychological Control in Early Adolescence. Child Development, 2001. 72(2): p. 583-598.
B1379 - Data mining for robust identification of causal hypotheses - 07/06/2012
The aim is to identify methods for generation of causal hypotheses, using data mining techniques. Therefore, this will not involve testing specific hypotheses, but rather identifying new hypotheses from a large search space. This search space consists of an exposure subset and outcome subset, and the approaches will be flexible in the types of associations which can be found (e.g. non-linear). The exposure variables will be a set of Mendelian randomisation indicator variables - scores derived from genetic variants which have be previously identified as associated with a particular trait. We will use a large subset of available ALSPAC data as the outcome variable set. This project will include ensuring robustness against the issues of multiple hypothesis testing and also issues related to using a BMI score such as ensuring the association is not due to pleiotropy.
B1378 - Impact of physical activity on cognition in children and adolescents with developmental disorders - 07/06/2012
The ALSPAC dataset can answer the research questions we have efficiently and quickly, and with many major scientific strengths. It is the largest sample of its kind which is longitudinal, has good measures of the relevant exposures (total volume of habitual physical activity and intensity of physical activity measured by accelerometry at age 11 and 13y), of confounders, and of outcome measures (cognitive measures, academic attainment, mental health and well-being as measured by the SMFQ and the SDQ). Almost all previous studies to address our research questions have suffered from a combination of small sample size, cross-sectional design, crude or biased measures of exposures and/or outcomes, limited consideration of confounders.Please note that we already have the data required, as part of an existing collaboration with ALSPAC on a Bupa Foundation funded secondary analysis (ALSPAC coapplicants Prof Ness, Dr Leary, Dr Joinson; data buddy Dr Northstone) of associations between physical activity and cognition, academic attainment, and mental health in typically developing 11-13y olds in ALSPAC. The current proposal adddresses essentially the same research questions, but in study participants excluded from our current study on the grounds that they have developmental disorders.
B1376 - Mother-to-Child transmissibility of metabolic health gestational diabetes and epigenetic modification - 24/05/2012
The Northern Finland Birth Cohort Project (NFBC, www.kelo.oulu.fi/NFBC), Avon Longitudinal Study on Parents and Children (ALSPAC) and other projects have identified several characteristics of the foetal environment (e.g. parental stress, smoking/drinking, obesity, excessive weight gain and other complications during pregnancy) that impact on intrauterine growth, preterm birth, the hypothalamo-pituitary-adrenal (HPA) axis, neonatal health and later morbidity. In the present proposal we will focus in one of the most important complications of pregnancy, gestational diabetes mellitus (GDM), a feasible "test exposure" because of complexities and unpredictable problems in these analyses, while proposing to create a more extensive data resource for future analyses of e.g. gestational hypertensive disorders, stress, obesity and weight gain during pregnancy as a collaborative effort. Intrauterine period is highly susceptible for the impact of environment. Epigenetic changes play likely a key role also in normal development.
B1375 - Identification of normal and at-risk trajectories of blood pressure in pregnancy in relation to offspring health - 24/05/2012
Objectives:
1. To develop normal reference ranges (normograms) for blood pressure across pregnancy based on pre/early-pregnancy maternal risk factors, conditional on the first blood pressure measurement, and to assess the ability of deviations from these trajectories to predict PE, preterm birth and SGA.
2. To investigate associations of patterns of blood pressure change in pregnancy with offspring perinatal outcomes (preterm birth, birth weight and SGA) and cardiovascular risk factors, growth and changes in adiposity in the offspring during childhood and adolescence.
3. To identify maternal and fetal genetic variants related to blood pressure changes in pregnancy.
B1374 - HPA Axis Reactivity and the Risk of Subsequent Depression - 24/05/2012
To explore the relationship between the hypothalamic pituitary adrenal (HPA) axis and depression Hypotheses Abnormal HPA activity at 15 years is a risk factor for subsequent depression (at 18 years.) Exposure Abnormal HPA activity at 15 years (as approximated by cortisol awakening response and diurnal cortisol secretion.) Outcome Variable Depression at 18 years diagnosed by CIS-R. Confounding Variables Potential confounding factors are depression or anxiety at 15 years or previously, antenatal and postnatal depression, antenatal anxiety, lifestyle measures (sleep, fitness, and alcohol and illegal drug use,) body mass/ adiposity, gender, family history of depression, medications, smoking, stress (as approximated by socioeconomic status, significant life events and bullying), household composition, other psychiatric diagnosis or medical illness, and social support.
B1373 - Combined parental postnatal depression and its effect on children a systematic review and meta-analysis - 24/05/2012
Aims: This systematic review aims to determine the prevalence of combined parental depression during the prenatal period and first year post-partum
Published and unpublished observational studies (cohort and cross-sectional studies) were included in the investigation if they reported the prevalence of combined parental depression during pregnancy and/or the first year postpartum. Studies were considered if they were published between January 1980 and December 2011.
Parents aged 15 to 50 years old, who had a primary diagnosis of depressive disorder according to DSM or ICD criteria assessed by a clinical interview, or who scored as depressed on a validated questionnaire, during pregnancy or within 1 year of the birth of their child were included.
Outcome measures
1. Prevalence of combined parental depressive disorder according to DSM or ICD criteria
2. Prevalence of heightened risk of depression according to a validated questionnaire (e.g. Edinburgh Postnatal Depression Scale or Beck Depression Inventory) simultaneously in both parents
Potential confounding variables:
Parental age/SES/eduction, study quality/calendar year/locality, measure of depression
As for ALSPAC data specifically, I would be interested in data on the number of couples assessed prenatally (at 18 weeks gestation), and postnatally (8 weeks and 8 months postpartum) in which both the mother and her partner scored more than 12 on the Edinburgh Postnatal Depression Scale (EPDS). Also, for reference, I would like to know the total number of couples assessed at these time points and numbers of mothers and partners individually scoring greater than 12 on the EPDS.
B1372 - Can hip DXA scans be used to identify genetic determinants of hip shape and osteoarthritis - 24/05/2012
Mutations resulting in hip dysplasia represent rare but important causes of hip osteoarthritis (OA). Commoner forms of genetic variation, with more subtle effects hip shape, may also contribute to hip OA. However, though several components of hip shape are associated with hip OA, rather than a causal role, these relationships may reflect altered hip modeling secondary to OA. The present proposal is intended to identify the major common genetic determinants of hip shape, thereby enabling (i) Mendelian Randomisation studies to examine causal pathways between hip shape and OA, and, in the case of shape parameters found to play a causal role, (ii) the identification of novel genetic risk factors for OA acting through specific alterations in hip shape. Exposure Variables: GWAS data imputed to latest version of Hapmap. Further analyses may be performed in relation to rare variants from exome sequence data in those participants involved in UK10K, and to methylation data in those included in ARIES.
B1371 - The Genome-Wide Association Study of Phenotypic Robustness in Human-a Canalization Study - 24/05/2012
Aims
Human phenotypes exhibit significant levels of variation among individuals. Recently, genome-wide association studies (GWAS) have been performed to identify the genetic loci that control these variations. Despite the success of GWAS to identify a set of genetic loci, it has become widely recognized that these loci cannot fully explain the variance of a phenotype. One possible explaination is that there is phenotypic stochastic noise which has not been taken into account in the typical GWAS. Normally, only one measurement of phenotype from each individual has been used in the typical GWAS which could be considered as the average phenotype of each individual. However, if we measure one phenotype several times in one individual, we will find that in some people the phenotype is relatively stable while in other people the phenotype is relatively variable. In other words, people show different levels of phenotypic robustness (canalization). The genetic control on phenotypic robustness has been reported in plants, yeast and mice. However, there is still scarce data in human.
Hypothesis
We hypothesized that genetic components controlling phenotype robustness may exist in humans. Since typical GWAS's focus on the genetic variation impact upon average phenotypes, the findings from genetic control on phenotype stochastic noise would improve our understanding on the genotype-phenotype relationship. In TwinsUK dataset, we observed different levels of phenotypic robustness on glucose and lipids across multiple measures on each individual. In the initial GWA analysis on glucose level robustness, we found a trend of association on several genetic loci across the genome. In order to verify our finding, we will request to use the ALSPAC data to perfrom GWA on glucose level robustness. Then we will perform meta-analysis using GWAS results from TwinsUK and ALSPAC. We will carry out genome-wide meta-analysis on lipids levels as well.
Request Data
Exposure variables
The genome-wide genotypes are considered as exposure variables. Both genotyped and imputed SNPs will be used for analysis. We suggest to employ the following threshold for quality control of the SNPs:
a. Call rate greater than = 95%
b. Minor Allele Frequency greater than =1%
c. For the imputed SNPs, MACH r2greater than =3 or IMPUTE prop infogreater than =0.4
d.HWE pvalue greater than 10e-6
Outcome variables
Glucose levels and lipids levels (including HDL/LDL cholesterol, triglyceride) will be used to generate outcome variables. The individuals with greater than =2 measurements will be included in the analysis. The standard deviation of multiple measurements of phenotypic levels in each individual will be used as outcome variables. Age of phenotype collection will be included in the analysis model as covariate.
B1370 - Exploration of Special Educational Needs in Preterm Infants - 24/05/2012
Aims
To explore what the discrepancies between date of birth and expected date of birth have on neuro-cognitive outcomes in preterm infants.
Hypotheses
It is well recognised that infants born preterm, both at extreme gestations (e.g. less tah 28 weeks) but also at more modest gestations (e.g. 32-36 weeks) have worse outcomes at school age, including cognition and school performance. While direct neurological injury is an important component of this (particularly in the extremely preterm group) the process of prematurity has consequences on the measurement of these age-dependent variables and the school processes that the infants go through.
In most work cognitive and school measures are measured when the infants reach a specified age, and are rarely corrected for any prematurity. In addition infant's born preterm are more likely to enter school a year earlier than if they had been born at term with potential impacts on their ability to perform at this level.
Methodology
We will assess the relative risk, and population impact of being born at different gestational ages compared to term infants. Gestational groups are anticipated to be less than 28 weeks, 28 to 32 weeks, 33 to 36 weeks and 37 to 42 weeks. Post term (greater than 42 week infants) will not be included. Associations of these gestational groups with the presence of special educational needs and cognition will be derived and an estimate of population impact calculated. Unadjusted and adjusted results will be derived consistent with previous work.
This will be done in three ways:
1) Matching each preterm infant with a term infant born in the same month and year.
2) Matching each preterm infant with a term infant with equivalent expected date of birth (month and year)
3) Matching each preterm infant with a term infant with equivalent expected date of birth (month and year) who also entered school in the same school year.
Exposure: Gestation
Outcomes: Special Educational Needs and Cognition
Confounders: Birth condition, growth, gender, parity, maternal hypertension, maternal pyrexia, mode of delivery, maternal age, socio-economic position, educational achievement, tenure, crowding index, ethnicity, place of birth
B1369 - Multiple Risk Behaviours in Adolescence association of outcomes at age 18 and risk behaviours at age 16 - 24/05/2012
We are requesting access to the age data on these variables at age 17-19 in order to undertake initial descriptive analyses of the all of outcomes at this age, followed by more complex analyses exploring the extent to which and ways in which these outcomes are associated with clusters of risk behaviours at age 15/16 identified using latent class analysis. Adjustment for missing data will be undertaken using multiple imputation techniques. The work is being undertaken as part of the DECIPHer programme of work on multiple risk behaviours in adolescence. The work is directed by a multi disciplinary group of researchers, led by Prof Rona Campbell and Prof Matt Hickman, with involvement from Dr Ruth Kipping, Dr Jon Heron and Dr Michele Smith. Dr Michele Smith will undertake the descriptive analysis and Dr Jon Heron will undertake the latent class analysis. Michele Smith is supported by Jon Heron and hence there is no need to incur the time (and therefore costs) of a data buddy to facilitate the use of the data.
B1368 - Gender inequalities in early life health outcomes are they important and can they be modified - 24/05/2012
Aims:
This project aims to quantify gender inequalities in pre-natal and neonatal health outcomes and examine whether the maternal environment modifies the risks. Hypothesis:The maternal environment and offspring gender modify each other's influence on key early life health outcomes. Our first objective is to quantify the degree of excess risk to males across several linked outcomes in early life. By undertaking a cohesive overview of existing databases, the work will identify whether gender imbalances are increasing or static, and whether patterns are consistent across countries. Our second objective is to review systematically the extent to which published studies and datas on the primary outcomes take account of gender as a potential modifier of the effect of treatments and risk factors, and to review their statistical power to detect interactions if they exist. Our final objective is to test the hypothesis that maternal environment (smoking, race, social class, maternal age, and economic deprivation) interacts with gender in determining the degree of risk of the outcomes.