Proposal summaries

These are research proposals that have been approved by the ALSPAC exec. The titles include a B number which identifies the proposal and the date on which the proposals received ALSPAC exec approval.

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B2454 - An EWAS of Anti-Mullerian Hormone - 04/06/2015

B number: 
B2454
Principal applicant name: 
Dr Abigail Fraser (Univeristy of Bristol, UK)
Co-applicants: 
Dr Cathy Elks (Not used 0, Not used 0), Prof Scott Nelson (Not used 0, Not used 0), Prof Debbie A Lawlor (Univeristy of Bristol, UK)
Title of project: 
An EWAS of Anti-Mullerian Hormone
Proposal summary: 

The aim of this study is to identify differential methylation in cord blood that is associated with AMH levels in female and male adolescents (separately) 15 years of age.

Date proposal received: 
Thursday, 21 May, 2015
Date proposal approved: 
Thursday, 4 June, 2015
Keywords: 
Hormones, Fertility/Infertility
Primary keyword: 
Reproductive Health

B2453 - NutriCog Use of ALSPAC data to identify dietary factors associated with cognitive functioning - 04/06/2015

B number: 
B2453
Principal applicant name: 
Sibylle Kranz (Univeristy of Bristol, UK)
Co-applicants: 
Dr Kasia Kordas (Univeristy of Bristol, UK)
Title of project: 
NutriCog: Use of ALSPAC data to identify dietary factors associated with cognitive functioning
Proposal summary: 

The overall objective of our research is to identify dietary components associated with better health and quality of life. For this project in particular, we focus on the relationship of foodgroups, foods, and nutrients and cognitive performance. ALSPAC is a rich source of diet and nutrition data throughout childhood and there is already existing evidence that food intake patterns in early childhood are associated with children's IQ. We wish to extend upon the existing research to investigate how nutrient and food intakes (including dietary patterns) throughout childhood but particularly in the early school years relate to more specific measures of children's cognition (atttentional control and other executive functions), to overall school performance and to parents' ratings of child behavior. The findings from this study will be used to inform the design of nutrition-based interventions in school children in the two other participating countries (Germany and Spain).

Date proposal received: 
Wednesday, 20 May, 2015
Date proposal approved: 
Thursday, 4 June, 2015
Keywords: 
Cognitive Function, Education, Nutrition
Primary keyword: 

B2432 - Genome-wide association analysis of 2D4D finger ratio - 30/05/2015

B number: 
B2432
Principal applicant name: 
Dr Dave Evans (University of Bristol, UK)
Co-applicants: 
Title of project: 
Genome-wide association analysis of 2D:4D finger ratio
Proposal summary: 

Genome-wide association analysis of 2D:4D finger ratio

Date proposal received: 
Thursday, 23 April, 2015
Date proposal approved: 
Saturday, 30 May, 2015
Keywords: 
Hormones
Primary keyword: 
GWAS

B2449 - Frequency association statistics and LD lookups of 6 variants associated with height to fine map a Sardinia GWAS signa - 21/05/2015

B number: 
B2449
Principal applicant name: 
Francesco Cucca (Istituto di Ricerca Genetica e Biomedica, Italy)
Co-applicants: 
Nick Timpson (University of Bristol, UK), Dr Ele Zeggini (Sanger Institute, UK)
Title of project: 
Frequency, association statistics and LD lookups of 6 variants associated with height to fine map a Sardinia GWAS signa
Proposal summary: 

This proposal is specifically to look up the allele frequency and height association summary statistics of 6 SNPs.

Date proposal received: 
Sunday, 17 May, 2015
Date proposal approved: 
Thursday, 21 May, 2015
Keywords: 
GWAS, Height
Primary keyword: 

B2448 - Schizophrenia risk genes immune markers and cognition - 21/05/2015

B number: 
B2448
Principal applicant name: 
Prof Gary Donohoe (Not used -1, Not used -1)
Co-applicants: 
Derek Morris (Not used -1, Not used -1)
Title of project: 
Schizophrenia risk genes, immune markers and cognition
Proposal summary: 

The purpose of this study is to determine whether the effects of schizophrenia related risk genes on cognitive performance are mediated via changes in pro- and anti-inflammatory cytokines.

Date proposal received: 
Thursday, 14 May, 2015
Date proposal approved: 
Thursday, 21 May, 2015
Keywords: 
Cognitive Function, Immunity, Schizophrenia
Primary keyword: 

B2447 - Characterising the psychological and neurobiological alterations associated with APOE-e4 - 21/05/2015

B number: 
B2447
Principal applicant name: 
Prof Kim Graham (University of Cardiff, UK)
Co-applicants: 
Title of project: 
Characterising the psychological and neurobiological alterations associated with APOE-e4
Proposal summary: 

A. To obtain new cognitive data in ALSPAC focused on online psychological tasks proposed to be sensitive to early life brain changes associated with APOE-e4

B. To understand how performance on these tasks is moderated by factors, such as cognitive reserve, gender and lifestyle, as well as whether there are associations with inflammation, as measured by elevated pro-inflammatory markers

Date proposal received: 
Wednesday, 20 May, 2015
Date proposal approved: 
Thursday, 21 May, 2015
Keywords: 
Cognitive Function, Genetics
Primary keyword: 

B2446 - Inferring whole-phenome architecture of complex traits - 21/05/2015

B number: 
B2446
Principal applicant name: 
Dr Gibran Hemani (University of Bristol, UK)
Co-applicants: 
Dr Caroline Relton (University of Bristol, UK), Dr Josine Min (University of Bristol, UK), Dr Matt Suderman (University of Bristol, UK)
Title of project: 
Inferring whole-phenome architecture of complex traits
Proposal summary: 

Developing methods in estimation of the phenomic components of complex traits, which seeks to address the causal influence of different 'omic data sets on various complex traits.

Date proposal received: 
Wednesday, 13 May, 2015
Date proposal approved: 
Thursday, 21 May, 2015
Keywords: 
Epigenetics , Metabolomics, Expression
Primary keyword: 
RNA

B2445 - Outcomes in late adolescence in children with Developmental Coordination Disorder - 21/05/2015

B number: 
B2445
Principal applicant name: 
Ian Harrowell (University of Bristol, UK)
Co-applicants: 
Prof Alan Emond (University of Bristol, UK), Dr Linda Hollen (University of Bristol, UK), Dr Raghu Lingam (University of Newcastle, UK)
Title of project: 
Outcomes in late adolescence in children with Developmental Coordination Disorder
Proposal summary: 

The aim of this project is to assess the associations between DCD at age 7 years and difficulties in a number of psychosocial measures, and educational outcomes, at age 15-18 years. We intend to use multi-variate logistic regression to investigate how DCD affects outcomes in late adolescence in three main domains: psychological, social and education.

Date proposal received: 
Thursday, 7 May, 2015
Date proposal approved: 
Thursday, 21 May, 2015
Keywords: 
Primary keyword: 
Moto Co-ordination

B2444 - Exploiting the existing biomarker data available in CLOSER social position age and allostatic load - 21/05/2015

B number: 
B2444
Principal applicant name: 
Prof Meena Kumari (Essex University,Colchester, UK)
Co-applicants: 
Title of project: 
Exploiting the existing biomarker data available in CLOSER: social position, age and allostatic load
Proposal summary: 

Rationale:

Ageing, Social science and allostatic load

Many physiological systems are proposed as the mediators that allow social processes to "get under the skin". Allostatic load is conceptualised as the 'wear and tear' associated with the response to chronic or repeated stress (Mcewen and Stellar 1993). The concept has been adopted in many analyses of the association of the social environment with health as it represents the impact on a multiple physiological systems including 'primary' stress pathways and secondary 'intermediate' pathways (Seeman et al., 2001). A number of studies within CLOSER and others that have detailed measures of the social environment have used the concept of allostatic load to examine social, psychological and other exposures (Babosa-Solis et al., 2015, Read & Grundy, 2015; Rod et al., 2015; Robertson et al., 2015). Allostatic load is generally measured through a composite index of indicators that reflect this multi-system approach and include neuroendocrine, metabolic, immune and cardiovascular markers. However operationalisation of allostatic load varies across surveys as it is limited to the availability of biomarkers within studies. Consequently, it is difficult to compare analyses across cohorts. While there are a few studies in younger age groups (Brody et al., 2014), studies that have examined allostatic load are generally conducted in older age groups (Seeman et al., 2010; Gruenwald et al., 2012; Read and Grundy, 2014). It is unclear that the allostatic load construct remains stable by age or by other factors such as medication status (Booth et al., 2014). A number of studies have suggested that allostatic load varies by social position (Seeman et al., 2010; Gruenwald et al., 2012). Again a majority of these studies are conducted in older age groups and, while one suggests that social differences in allostatic load are apparent in those aged under 75 y only (Robertson et al., 2014), further work is required to understand when in the lifespan the association of allostatic load with measures of social position emerges.

Plan of analyses

1)We will catalogue the biomarkers in the component studies within CLOSER and other studies such as Whitehall II, Twenty-07 and ELSA. In doing this we will highlight valuable analytes for social-biological research, and provide guidance on the key issues that need to be considered in their analysis.

2) We would scope the literature to examine which biological markers are typically included in the construction of Allostatic load. Examine which of the identified markers have been collected across the CLOSER studies with a focus on categorising them as components of primary or intermediate and markers. We will then examine how the inclusion/exclusion of typical plus additional markers might affect our understanding of the construct and its social patterning.

Finally we propose three substantive research questions:

1)to operationalise 'allostatic load' across the cohorts with varying inclusion criteria and by medication status.

2)to capitalise on the on-going work package in CLOSER, which has harmonised measures of social position across the CLOSER studies and examine how social position is related to 'Allostatic load'.

3)to capitalise on the wide age range available in with CLOSER studies to examine how allostatic load evolves across the age span.

Date proposal received: 
Wednesday, 20 May, 2015
Date proposal approved: 
Thursday, 21 May, 2015
Keywords: 
Biological Samples
Primary keyword: 
Cross Cohort Study

B2452 - Signature pathways of early life nutritional environment - 21/05/2015

B number: 
B2452
Principal applicant name: 
Nina Balthasar (University of Bristol, UK)
Co-applicants: 
Dr Tom Gaunt (University of Bristol, UK), Dr Charles Hindmarch (Not used 0, Not used 0)
Title of project: 
Signature pathways of early life nutritional environment
Proposal summary: 

This proposed project aims to:

1. Identify CNS and blood signature pathways altered by early life high-fat/high-sugar diet exposure in mice.

2. Assess whether these signature pathways identify individuals at risk of adult metabolic or cardiovascular disease in human cohort data.

Date proposal received: 
Wednesday, 20 May, 2015
Date proposal approved: 
Thursday, 21 May, 2015
Keywords: 
Nutrition, Obesiy, ARIES
Primary keyword: 

B2450 - Building a longitudinal picture of early life adversity and life course health - 21/05/2015

B number: 
B2450
Principal applicant name: 
Dr Rebecca Lacey (University College London, UK)
Co-applicants: 
Prof Stephen Stansfeld (Queen Mary, University of London, UK), Dr Charlotte Clark (Queen Mary, University of London, UK)
Title of project: 
Building a longitudinal picture of early life adversity and life course health
Proposal summary: 

This is a five year fellowship which aims to assess the importance of early life adversity for health at different points in the life course using good quality, prospective data from Great Britain and Sweden.

AIM - the aim of the research is to assess whether early life adversity is associated with biomarkers of stress in childhood amongst children in Great Britain.

Date proposal received: 
Monday, 18 May, 2015
Date proposal approved: 
Thursday, 21 May, 2015
Keywords: 
Biological Samples, Depression, Smoking
Primary keyword: 

B2434 - Pilot study to measure arsenic exposure in ALSPAC participants - 21/05/2015

B number: 
B2434
Principal applicant name: 
Dr Kasia Kordas (University of Bristol, UK)
Co-applicants: 
Marie Vahter (Not used 0, Not used 0)
Title of project: 
Pilot study to measure arsenic exposure in ALSPAC participants
Proposal summary: 

The aim of this pilot project is to determine the extent to which ALSPAC participants are exposed to arsenic. To carry out this aim, we propose to select 50 urine samples from ALSPAC participants to analyze for methylated arsenic species (inorganic arsenic, monomethylarsonic acid, dimethylarsinic acid). This will allow us to initially characerize the level of exposure to inorganic arsenic and determine whether it is scienitifcally worthwhile to pursue additional analyses on a larger pool of participants to test specific scientific hypotheses.

Date proposal received: 
Wednesday, 20 May, 2015
Date proposal approved: 
Thursday, 21 May, 2015
Keywords: 
Methods
Primary keyword: 

B2442 - Association of mtDNA SNPs with anthropometric and glycemic traits integration with the CHARGEmtDNA consortium - 15/05/2015

B number: 
B2442
Principal applicant name: 
Santiago Rodriguez (University of Bristol, UK)
Co-applicants: 
Dr Evie Stergiakouli (University of Bristol, UK), Mr Mesut Erzurumluoglu (University of Bristol, UK), Dr Gibran Hemani (University of Bristol, UK)
Title of project: 
Association of mtDNA SNPs with anthropometric and glycemic traits: integration with the CHARGEmtDNA+ consortium
Proposal summary: 

a. To perform association of adipose and glycemic traits with mtDNA SNPs in ALSPAC.

b. To perform the association of adipose and glycemic traits with nucmtDNA SNPs in ALSPAC.

c. To meta-analyse the results on all CHARGEmtDNA+ cohorts

Date proposal received: 
Tuesday, 12 May, 2015
Date proposal approved: 
Friday, 15 May, 2015
Keywords: 
DNA
Primary keyword: 
Anthropometry

B2441 - A Bayesian mixture framework for epigenetics - 15/05/2015

B number: 
B2441
Principal applicant name: 
Frank de Vocht (University of Bristol, UK)
Co-applicants: 
Prof Kate Tilling (Not used 0, Not used 0), Dr Rebecca Richmond (Not used 0, Not used 0), Andrew Simpkin (Not used 0, Not used 0)
Title of project: 
A Bayesian mixture framework for epigenetics
Proposal summary: 

To further develop a statistical framework to model the epigenetic effects of maternal tobacco smoking on offspring and explore changes in the epigenetic profile over time.

Date proposal received: 
Monday, 11 May, 2015
Date proposal approved: 
Friday, 15 May, 2015
Keywords: 
Alcohol, Epigenetics
Primary keyword: 
Smoking

B2443 - Methodological toolkit for using digital devices to capture predictive patterns of health behaviours in cohort studies - 14/05/2015

B number: 
B2443
Principal applicant name: 
Dr Andy Skinner (University of Bristol, UK)
Co-applicants: 
Prof Kate Tilling (University of Bristol, UK), Dr Tom Gaunt (University of Bristol, UK), Prof Marcus Munafo (University of Bristol, UK), Prof Debbie A Lawlor (University of Bristol, UK), Prof Madeleine Murtagh (University of Bristol, UK)
Title of project: 
Methodological toolkit for using digital devices to capture predictive patterns of health behaviours in cohort studies
Proposal summary: 

Aims

This project will develop new methods for capturing and analysing health behaviour data from digital devices in cohort studies. It will address specific research questions around identifying patterns of behaviours that predict the start and stop of certain behaviours, including smoking, drinking and snack eating. The underlying methods will be developed in ALSPAC and one other ERSC resourced cohort study (e.g. Understanding Society), and will be designed such they can, through the ESRC's National Centre for Research Methods (NCRM), be adopted by a wider set of cohort studies.

Date proposal received: 
Thursday, 14 May, 2015
Date proposal approved: 
Thursday, 14 May, 2015
Keywords: 
Primary keyword: 
Methodology

B2440 - Are prenatal metabolites nutrients and toxins linked to lung function in adolescence via DNA methylation - 14/05/2015

B number: 
B2440
Principal applicant name: 
Wilfried Karmaus (Not used -1, Not used -1)
Co-applicants: 
Title of project: 
Are prenatal metabolites, nutrients, and toxins linked to lung function in adolescence via DNA methylation?
Proposal summary: 

Are prenatal metabolites, nutrients, and toxins linked to lung function in adolescence via DNA methylation?

Date proposal received: 
Friday, 8 May, 2015
Date proposal approved: 
Thursday, 14 May, 2015
Keywords: 
DNA, Epigenetics
Primary keyword: 
Respiratory

B2439 - Social educational and medical outcomes in young adults on renal replacement therapy in the UK - 08/05/2015

B number: 
B2439
Principal applicant name: 
Alexander Hamilton (University of Bristol, UK)
Co-applicants: 
Prof Yoav Ben-Shlomo (University of Bristol, UK), Fergus Caskey (Not used 0, Not used 0), Carol Inward (Not used 0, Not used 0)
Title of project: 
Social, educational and medical outcomes in young adults on renal replacement therapy in the UK
Proposal summary: 

Identify broad social outcomes for young adults on renal replacement therapy

Date proposal received: 
Tuesday, 5 May, 2015
Date proposal approved: 
Friday, 8 May, 2015
Keywords: 
Substance Use, Drugs
Primary keyword: 
Crime

B2437 - Epigenome-wide association study of atopic dermatitis - 07/05/2015

B number: 
B2437
Principal applicant name: 
Dr Lavinia Paternoster (University of Bristol, UK)
Co-applicants: 
Gemma Sharp (Not used 0, Not used 0), Diana Juvinao-Quintero (Not used 0, Not used 0)
Title of project: 
Epigenome-wide association study of atopic dermatitis
Proposal summary: 

To identify and assess the causal nature of associations between epigenome-wide methylation levels and atopic dermatitis

Date proposal received: 
Tuesday, 5 May, 2015
Date proposal approved: 
Thursday, 7 May, 2015
Keywords: 
Primary keyword: 
Atopic Dermatitis

B2436 - PI-MZ genotype effects on human complex traits including respiratory capacity and height and possible mechanisms - 07/05/2015

B number: 
B2436
Principal applicant name: 
Dr Philip Guthrie (University of Bristol, UK)
Co-applicants: 
Prof Ian Day (Not used 0, Not used 0), Santi Rodriguez (Not used 0, Not used 0)
Title of project: 
PI-MZ genotype: effects on human complex traits including respiratory capacity and height, and possible mechanisms.
Proposal summary: 

PI-MZ genotype: effects on human complex traits including respiratory capacity and height, and possible mechanisms.

Date proposal received: 
Tuesday, 5 May, 2015
Date proposal approved: 
Thursday, 7 May, 2015
Keywords: 
Anthropometry, Respiratory
Primary keyword: 
Cardiovascular

B2428 - Youths Resilience and Vulnerability to Maladaptation - 30/04/2015

B number: 
B2428
Principal applicant name: 
Jaap Nieuwenhuis (Delft University of Technology, EU)
Co-applicants: 
Dr David Manley (University of Bristol, UK), maartin van Haam (Not used 0, Not used 0)
Title of project: 
Youths? Resilience and Vulnerability to Maladaptation
Proposal summary: 

Aim: To look at the moderating effect of resilience on the effect of neighbourhood deprivation on educational outcomes and externalising problem behaviours.

Resilience is a dynamic developmental process, encompassing the attainment of positive adaptation within the context of adversity (Cicchetti, 2010). Youths with different individual characteristics respond differently to environmental stress, leading either to pathological or resilient developmental outcomes. To explore differences in vulnerability and resilience to environmental adversities, we propose to examine the interaction effects between three important individual psychological and biological characteristics

Date proposal received: 
Thursday, 30 April, 2015
Date proposal approved: 
Thursday, 30 April, 2015
Keywords: 
Environment, Genetics
Primary keyword: 
Education

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