Proposal summaries

These are research proposals that have been approved by the ALSPAC exec. The titles include a B number which identifies the proposal and the date on which the proposals received ALSPAC exec approval.

Click here to export results in Word format.

B2522 - Generation of summary linkage disequilibrium statistics for gene set enrichment analysis using the ALSPAC genotype data - 24/09/2015

B number: 
B2522
Principal applicant name: 
Beate St Pourcain | MRCIEU, MPI for Psycholinguistics
Co-applicants: 
Johannes Waage, Simon Fisher
Title of project: 
Generation of summary linkage disequilibrium statistics for gene set enrichment analysis using the ALSPAC genotype data
Proposal summary: 

This project extends research collaborations with COPSAC within the UK10K project. The project will generate a summary of genetic relationships between genetic variants, which will help to improve the power of gene-set enrichment analyses. The summary of genetic relationships will be available to ALSPAC users and shared with COPSAC.

Date proposal received: 
Tuesday, 1 September, 2015
Date proposal approved: 
Thursday, 24 September, 2015
Keywords: 
Genetics, Statistical methods, Gene set enrichment analysis

B2532 - Abnormal metabolic measures in adolescents with pyschotic experiences - 24/09/2015

B number: 
B2532
Principal applicant name: 
Nomi Werbeloff (UCL, Division of Psychiatry, UK)
Co-applicants: 
David Osborn (UCL, Division of Psychiatry, UK), Joseph F Hayes (UCL, Division of Psychiatry, UK)
Title of project: 
Abnormal metabolic measures in adolescents with pyschotic experiences
Proposal summary: 

To examine whether people with psychotic experiences at age 18 are more likely to have abnormal metabolic measures in the period preceding the onset of such symptoms, and at what time point are these abnormalities evident. If there will be evidence of an association between metabolic disorders and psychotic experiences, we will then examine whether this association is specific to psychotic experiences or occurs across a range of psychiatric disorders.

Date proposal received: 
Friday, 11 September, 2015
Date proposal approved: 
Thursday, 24 September, 2015
Keywords: 
Metabolomics, Psychology
Primary keyword: 

B2528 - The impact of cycle proficiency training on cycle-related behaviours and accidents in adolescence - 18/09/2015

B number: 
B2528
Principal applicant name: 
Alison Teyhan | University of Bristol (United Kingdom)
Co-applicants: 
John Macleod, Rosie Cornish, Andy Boyd
Title of project: 
The impact of cycle proficiency training on cycle-related behaviours and accidents in adolescence
Proposal summary: 

Education is one strategy to reduce cycle-related accidents, and many countries have training courses for children. In the UK, the National Cycle Proficiency Scheme (NCPS) was first introduced in 1947. A typical course takes place during the final years of primary school and 40% of children participate by their twelfth birthday. Despite the significant resources invested in child cycle training both in the UK and elsewhere, there has been little scientific evaluation of their outcomes.

Date proposal received: 
Tuesday, 8 September, 2015
Date proposal approved: 
Friday, 18 September, 2015
Keywords: 
Epidemiology, Accident prevention; cycle training; cycle behaviours

B2536 - Genetic risk factors for childhood dental caries - 18/09/2015

B number: 
B2536
Principal applicant name: 
Simon Haworth | MRC IEU, Bristol (Bristol)
Co-applicants: 
Mr Simon Haworth
Title of project: 
Genetic risk factors for childhood dental caries
Proposal summary: 

Dental caries (decay) is a common disease in children. The consequences of dental caries include pain and infection and this has a major impact on children and their families. In severe cases children may require a general anaesthetic for removal of decayed teeth. Dental caries runs in families and about 50% of the risk of caries is due to genetic factors. Despite this, the individual genetic factors responsible are not well understood, probably because previous studies have been too small to find individual genetic factors. We have been asked to contribute data from ALSPAC to a new analysis, which will have a larger overall study size than previous analyses, and a greater chance of finding new genetic factors.

Date proposal received: 
Wednesday, 16 September, 2015
Date proposal approved: 
Friday, 18 September, 2015
Keywords: 
Epidemiology, Dental caries, GWAS, Childhood - childcare, childhood adversity, Dental, Genetics - e.g. epigenetics, mendelian randomisation, UK10K, sequencing, etc.

B2535 - Lifecourse epidemiological investigations of Eyes and Vision CLOSER workpackage 4

B number: 
B2535
Principal applicant name: 
Jugnoo S Rahi | UCL Institute of Child Health (UK)
Co-applicants: 
Phillippa Cumberland, Antonietta Chianca, Cathy Williams, Prof Jez Guggenheim
Title of project: 
Lifecourse epidemiological investigations of Eyes and Vision (CLOSER workpackage 4)
Proposal summary: 

Refractive error (e.g. myopia) is an important public health concern worldwide, as the most common cause of impaired vision. There is increasing interest in the affect of social position on visual health, considering the whole range of severity including those with mild impairment. ALSPAC is included in our programme of work within CLOSER (Cohort & Longitudinal Studies Enhancement Resource) which is investigating visual function and refractive error, making comparisons both within and across UK-based cohort and longitudinal studies. We will apply life course epidemiological approaches to investigate biological, environmental and lifestyle factors influencing the development of refractive error and the biological and social factors that influence visual health. We will also investigate the health and social outcomes associated with impaired visual health and with refractive error. Using several studies, which started recruitment at different times, we will assess any changes over time in both risk factors and outcomes which may help to identify modifiable risk factors.

Date proposal received: 
Tuesday, 15 September, 2015
Date proposal approved: 
Friday, 18 September, 2015
Keywords: 
Ophthalmology, Refractive error, specifically myopia, and visual impairment, Statistical methods, Life course epidemiology, Statistical methods, Vision, visual acuity, refractive error, self-report

B2530 - statistical method development and application for genetic fine mapping using meta-analysis summary statistics - 18/09/2015

B number: 
B2530
Principal applicant name: 
Jie Zheng | MRC IEU (UK)
Co-applicants: 
Dr. Tom Gaunt, Dr. Santiago Rodriguez , Prof Dave Evans
Title of project: 
statistical method development and application for genetic fine mapping using meta-analysis summary statistics
Proposal summary: 

This project is aiming to develop a genetic fine mapping tool (HAPRAP) using meta-analysis summary statistics only. The method can be used as a model selection approach for 2 sample MR.
We are also aiming to apply HAPRAP to all public available GWAS meta-analysis summary statistics.

Date proposal received: 
Thursday, 10 September, 2015
Date proposal approved: 
Friday, 18 September, 2015
Keywords: 
Genetics, GWAS, Statistical methods, Genetics - e.g. epigenetics, mendelian randomisation, UK10K, sequencing, etc., Statistical methods

B2521 - The influence of the onset of puberty on skin pigmentation and sun exposure patterns in pre and post-pubertal children

B number: 
B2521
Principal applicant name: 
Carolina Bonilla | School of Social and Community Medicine (United Kingdom)
Co-applicants: 
Dr. Sarah Lewis
Title of project: 
The influence of the onset of puberty on skin pigmentation and sun exposure patterns in pre and post-pubertal children
Proposal summary: 

Skin pigmentation differs between the sexes. In most populations, women exhibit lighter skin than men, which could be a consequence of requiring greater quantities of vitamin D to support pregnancy and lactation, of having more subcutaneous adipose tissue with less melanogenesis-stimulating androgens than men, and/or of a preference of males for fairer females(1,2). Among pre-pubertal children, however, girls are usually darker than boys, but this appears to reverse at the onset of puberty(1,3). We propose to use genetic variants strongly associated with age at menarche and Tanner stage (a measurement of pubertal development in adolescents)(4,5) to examine the relationship between puberty initiation and pigmentation changes, with particular emphasis on the consequences that these changes bring to sun exposure patterns and vitamin D levels, in ALSPAC children. Additionally, we will assess the role that androgens and estrogens play in eliciting gender pigmentation differences, using a similar framework.

Date proposal received: 
Thursday, 27 August, 2015
Date proposal approved: 
Friday, 11 September, 2015
Keywords: 
Anthropology, skin pigmentation sun exposure, Dermatology, Genetics - e.g. epigenetics, mendelian randomisation, UK10K, sequencing, etc., Hormones - cortisol, IGF, thyroid, Puberty, Sex differences, pigmentation, puberty

B2523 - Using genetic data to re-index ALSPAC and identify new data/samples - 11/09/2015

B number: 
B2523
Principal applicant name: 
Nicholas Timpson | UoB and MRC IEU (Bristol)
Co-applicants: 
Dr George McMahon, Dr Gibran Hemani
Title of project: 
Using genetic data to re-index ALSPAC and identify new data/samples
Proposal summary: 

This project has the simple objective to reassess the current ALSPAC ID system (which summarises individual identification and relatedness through pregnancy identifiers and birth order) using genetic data. Data and sample identification is an ongoing challenge within the ALSPAC study and studies more generally and the availability of genetic data on (in principle) all participants allows for a re-indexing of samples uniquely and relative to each other in terms of relatedness. There is an academic component to this in understanding the level of relatedness (cryptic or otherwise) in this sample and also a practical aim to this in that this will allow (i) the confirmation of existing IDs and (ii) the proper identification of sample relatedness where sample IDs exist, but no information as to the contribution to family status is available. This will be done solely with genetic data and as such will not be subject to administrative error.

Date proposal received: 
Thursday, 27 August, 2015
Date proposal approved: 
Friday, 11 September, 2015
Keywords: 
Genetics

B2516 - The genetic architecture of pro-social behaviour - 03/09/2015

B number: 
B2516
Principal applicant name: 
Dr Beate St. Pourcain (University of Bristol, UK)
Co-applicants: 
Prof George Davey Smith (Univeristy of Bristol, UK), Simon Fisher (Not used 0, Not used 0), Claire Hawoth (University of Bristol, UK), Oliver Davis (Not used 0, Not used 0)
Title of project: 
The genetic architecture of pro-social behaviour
Proposal summary: 

Human social interaction plays an important role in social success, adjustment and development. This involves also altruistic and prosocial behaviour1, which supports creating and maintaining social bonds, an important quality of functioning societies2. Prosocial behaviour is one of the most heritable social skills with twin heritabilities rising from 0.32 during early childhood to 0.61 during middle childhood3. It is strongly associated with social cognition and intelligence, and prosocial motivation is one of the three major cognitive components, which have been hypothesized to underlie empathyADDIN ZOTERO_ITEM CSL_CITATION{"citationID":"16tvof0ais","properties":{"formattedCitation":"{\rtf\super4\nosupersub{}}","plainCitation":"4"},"citationItems":[{"id":3140,"uris":["http://zotero.org/users/8513/items/9AICVEX6"],"uri":["http://zotero.org/users/8513/items/9AICVEX6"],"itemData":{"id":3140,"type":"article-journal","title":"Theneuroscience of empathy: progress, pitfalls andpromise","container-title":"Nature Neuroscience","page":"675-680","volume":"15","issue":"5","source":"www.nature.com","abstract":"Thelast decade has witnessed enormous growth in the neuroscience of empathy. Here,we survey research in this domain with an eye toward evaluating its strengthsand weaknesses. First, we take stock of the notable progress made by earlyresearch in characterizing the neural systems supporting two empathicsub-processes: sharing others' internal states and explicitly considering thosestates. Second, we describe methodological and conceptual pitfalls into whichthis work has sometimes fallen, which can limit its validity. These include theuse of relatively artificial stimuli that differ qualitatively from the socialcues people typically encounter and a lack of focus on the relationship betweenbrain activity and social behavior. Finally, we describe current researchtrends that are overcoming these pitfalls through simple but importantadjustments in focus, and the future promise of empathy research if thesetrends continue and expand.
View fulltext","DOI":"10.1038/nn.3085","ISSN":"1097-6256","shortTitle":"Theneuroscience of empathy","journalAbbreviation":"NatNeurosci","language":"en","author":[{"family":"Zaki","given":"Jamil"},{"family":"Ochsner","given":"KevinN."}],"issued":{"date-parts":[["2012",5]]}}}],"schema":"https://github.com/citation-style-language/schema/raw/master/csl-citation.json"}4. The neurobiological basis of pro-social behaviour and empathy is complex. Empathic cognition has been linked to multiple subcortical regions such as the limbic system, the putative mirror system, a proposed mentalising network 5,6, as well as the septal area, which has also been associated with prosocial motivation e.g. ADDIN ZOTERO_ITEM CSL_CITATION{"citationID":"XIZroMmB","properties":{"formattedCitation":"{\rtf\super7,8\nosupersub{}}","plainCitation":"7,8"},"citationItems":[{"id":3151,"uris":["http://zotero.org/users/8513/items/W9689QEU"],"uri":["http://zotero.org/users/8513/items/W9689QEU"],"itemData":{"id":3151,"type":"article-journal","title":"Neuralcorrelates of giving support to a lovedone","container-title":"PsychosomaticMedicine","page":"3-7","volume":"74","issue":"1","source":"PubMed","abstract":"OBJECTIVE:Social support may benefit mental and physical well-being, but most researchhas focused on the receipt, rather than the provision, of social support. Weexplored the potentially beneficial effects of support giving by examining theneural substrates of giving support to a loved one. We focused on a prioriregions of interest in the ventral striatum and septal area (SA) because oftheir role in maternal caregiving behavior in animals.
METHODS: Twentyromantic couples completed a functional magnetic resonance imaging session inwhich the female partner underwent a scan while her partner stood just outsidethe scanner and received unpleasant electric shocks.
RESULTS: Support giving(holding a partner's arm while they experienced physical pain), compared withother control conditions, led to significantly more activity in the ventralstriatum, a reward-related region also involved in maternal behavior (p valuesless than .05). Similar effects were observed for the SA, a region involved in bothmaternal behavior and fear attenuation. Greater activity in each of theseregions during support giving was associated with greater self-reported supportgiving effectiveness and social connection (r values = 0.55-0.64, p values less than .05). In addition, in line with the SA's role in fear attenuation (presumablyto facilitate caregiving during stress), increased SA activity during supportgiving was associated with reduced left (r = -0.44, p less than .05) and right (r =-0.42, p less than .05) amygdala activity.
CONCLUSIONS: Results suggest thatsupport giving may be beneficial not only for the receiver but also for thegiver. Implications for the possible stress-reducing effects of support givingare discussed.","DOI":"10.1097/PSY.0b013e3182359335","ISSN":"1534-7796","note":"PMID:22071630","journalAbbreviation":"PsychosomMed","language":"eng","author":[{"family":"Inagaki","given":"TristenK."},{"family":"Eisenberger","given":"NaomiI."}],"issued":{"date-parts":[["2012",1]]},"PMID":"22071630"}},{"id":3177,"uris":["http://zotero.org/users/1947403/items/PSZ5IXEX"],"uri":["http://zotero.org/users/1947403/items/PSZ5IXEX"],"itemData":{"id":3177,"type":"article-journal","title":"Impairmentof prosocial sentiments is associated with frontopolar and septal damage infrontotemporaldementia","container-title":"NeuroImage","page":"1735-1742","volume":"54","issue":"2","source":"PubMedCentral","abstract":"Poets and philosophers have longacknowledged moral sentiments as key motivators of human social behavior.Prosocial sentiments, which include guilt, pity and embarrassment, enable us tocare about others and to be concerned about our mistakes. Functional imagingstudies have implicated frontopolar, ventromedial frontal and basal forebrainregions in the experience of prosocial sentiments. Patients with lesions of thefrontopolar and ventromedial frontal areas were observed to behaveinappropriately and less prosocially, which could be attributed to ageneralized emotional blunting. Direct experimental evidence for brain regionsdistinctively associated with moral sentiment impairments is lacking, however.We investigated this issue in patients with the behavioral variant offrontotemporal dementia, a disorder in which early and selective impairments ofsocial conduct are consistently observed. Using a novel moral sentiment task,we show that the degree of impairment of prosocial sentiments is associatedwith the degree of damage to frontopolar cortex and septal area, as assessedwith 18-Fluoro-Deoxy-Glucose-Positron Emission Tomography, an establishedmeasure of neurodegenerative damage. This effect was dissociable fromimpairment of other-critical feelings (anger and disgust), which was in turnassociated with dorsomedial prefrontal and amygdala dysfunction. Our findingssuggest a critical role of the frontopolar cortex and septal region in enablingprosocial sentiments, a fundamental component of moralconscience.","DOI":"10.1016/j.neuroimage.2010.08.026","ISSN":"1053-8119","note":"PMID:20728544
PMCID:PMC2997153","journalAbbreviation":"Neuroimage","author":[{"family":"Moll","given":"Jorge"},{"family":"Zahn","given":"Roland"},{"family":"deOliveira-Souza","given":"Ricardo"},{"family":"Bramati","given":"IvaneiE."},{"family":"Krueger","given":"Frank"},{"family":"Tura","given":"Bernardo"},{"family":"Cavanagh","given":"AlysonL."},{"family":"Grafman","given":"Jordan"}],"issued":{"date-parts":[["2011",1,15]]},"PMID":"20728544","PMCID":"PMC2997153"}}],"schema":"https://github.com/citation-style-language/schema/raw/master/csl-citation.json"}7,8. In addition, several neuropsychiatric disorders show abnormal social functioning. Understanding the neural basis of prosocial behaviour has remained however challenging due to the diversity of cognitive assessments, developmental changes in genetic architecture of prosocial and cognitive skills and the wide range of often costly neuroimaging technologies.

Date proposal received: 
Monday, 24 August, 2015
Date proposal approved: 
Thursday, 3 September, 2015
Keywords: 
Primary keyword: 
GWAS

B2518 - Measuring psychological phenotypes using big data from online social networks

B number: 
B2518
Principal applicant name: 
Oliver Davis | MRC IEU
Co-applicants: 
Dr Claire Haworth
Title of project: 
Measuring psychological phenotypes using big data from online social networks
Proposal summary: 

Born around the same time as the commercial Internet, today’s emerging adults are the Internet generation, with the vast majority engaging frequently with their real-life peer groups through online social networks. Emerging adulthood is a critical period for the development of psychiatric disorders, so learning about these interactions is crucially important to our understanding of the origins of mental health and wellbeing. If we are to understand social influences on mental health and disorder in this or future generations of adults, then we must take notice of this online, as well as offline social activity. Fortunately, whereas offline social networks are difficult to assess and track, for this age group online social networks are detailed, ecologically valid databases of real time social activity. We are asking participants to provide us with their Twitter username and permission to download and anonymously analyse their publicly available tweets, to help us to understand changes in psychological wellbeing during emerging adulthood.

Date proposal received: 
Wednesday, 12 August, 2015
Date proposal approved: 
Thursday, 3 September, 2015
Keywords: 
Social Science, Behaviour - e.g. antisocial behaviour, risk behaviour, etc., Computer simulations/modelling/algorithms, Statistical methods, Psychology - personality, Social science, Statistical methods

B2512 - Investigating the role of 5-HT1BR in the development of aggression

B number: 
B2512
Principal applicant name: 
Katherine Nautiyal | Columbia University (United States)
Co-applicants: 
Professor Rene Hen, Dr Katherine Nautiyal
Title of project: 
Investigating the role of 5-HT1BR in the development of aggression.
Proposal summary: 

Impulsive aggression is a key feature of a number of psychiatric disorders including schizophrenia, bipolar disorder, post-traumatic stress disorder, attention deficit hyperactivity disorder, and conduct disorder. It has a deep impact on the patient, as well as society. Acts of aggression account for 1.5 million deaths annually worldwide, yet effective treatments for impulsive aggression are very limited. A better understanding of the development of aggressive behavior and the underlying neural circuits will allow for the development of interventions and targeted treatments for excessive aggression found in psychiatric disorders. From recent basic science research, using a novel transgenic mouse model we recently identified a developmental sensitive period for the effect of 5-HT1BR on aggression. Specifically, alterations in 5-HT1BR signaling during the peri-pubertal period lead to increased impulsive aggression in mice throughout life. Now, through epidemiological analysis of longitudinal studies, we will investigate the presence of a similar sensitive period for the development of aggression in humans.

Date proposal received: 
Tuesday, 11 August, 2015
Date proposal approved: 
Thursday, 3 September, 2015
Keywords: 
Epidemiology, Addiction - e.g. alcohol, illicit drugs, smoking, gambling, etc., Behaviour - e.g. antisocial behaviour, risk behaviour, etc., Genomics - structural variants, Statistical methods, Development, Genetics - e.g. epigenetics, mendelian randomisation, UK10K, sequencing, etc., Linkage, Psychology - personality, Social science, Statistical methods

2510 - Multidimensional phenotyping in eczema

B number: 
2510
Principal applicant name: 
Sinead Langan | London School of Hygiene and Tropical Medicine (UK)
Co-applicants: 
Dr Katrina Abuabara, Prof Neil Pearce, Professor Liam Smeeth
Title of project: 
Multidimensional phenotyping in eczema
Proposal summary: 

Eczema is a complex disease, with heterogeneous presentations, clinical courses and outcomes. Despite this, our approach to characterising eczema is surprisingly unidimensional. Failure to capture disease complexity when characterising patients is a major stumbling block, which limits understanding of eczema aetiology. It also hinders the practice of stratified medicine. At present, we are failing our patients, with inadequate strategies and therapeutic interventions. Novel therapeutic agents for eczema are on the horizon; multidimensional phenotyping would allow us to understand how to better use these and existing therapies to help our patients, by allowing us to tailor treatments for individual patients (personalized medicine). Understanding phenotypes would also help inform prevention strategies, which are important giving the rising prevalence of eczema.
We will use novel bioinformatic and statistical approaches to identify specific groups of individuals with eczema (phenotypes) in the Avon Longitudinal Study of Parents and Children (ALSPAC) prospective birth cohort study. Phenotypes will combine a variety of multidimensional characteristics including characteristics of the participant’s eczema and clinical history, immunological, genetic and novel biomarker characteristics. We will then assess predictors of clinical phenotypes.

Date proposal received: 
Monday, 3 August, 2015
Date proposal approved: 
Friday, 21 August, 2015
Keywords: 
Epidemiology, Eczema, Epigenetics, Metabolomics, Statistical methods, Other - please specify

B2514 - Antecedents of Trait Psychological Functioning

B number: 
B2514
Principal applicant name: 
Angelina Sutin | Florida State University College of Medicine
Co-applicants: 
Antonio Terracciano
Title of project: 
Antecedents of Trait Psychological Functioning
Proposal summary: 

The purpose of this research is to examine how prenatal behavioral, clinical, and biological risk factors and risks in the early childhood social environment independently and jointly contribute to the development of temperament and personality from early childhood through adolescence.

Date proposal received: 
Wednesday, 29 July, 2015
Date proposal approved: 
Friday, 21 August, 2015
Keywords: 
Mental health - Psychology, Psychiatry, Cognition

B2511 - Epigenome-wide association study of fatty acids - 21/08/2015

B number: 
B2511
Principal applicant name: 
David Evans | University of Queensland, University of Bristol
Co-applicants: 
Dr. Marie-Jo Brion, Prof. Caroline Relton, Ms Rebecca Richmond
Title of project: 
Epigenome-wide association study of fatty acids
Proposal summary: 

The epigenome is considered by some as the key missing piece to understanding the etiology of many biomedical diseases (Mill & Heijmans, Nat Rev Gen 2013). Epigenetic modifications are non-sequence based alterations to DNA that can induce stable changes in the regulation of gene expression. Technological advances in high-throughput DNA analysis have facilitated genome-wide examination of epigenetic modifications and large-scale association testing with disease-related outcomes. Such studies have found epigenetic markers to be associated with a variety of diseases (such as cancer and diabetes) as well as with environmental exposures (including BMI, smoking, alcohol and diet) (Relton & Davey Smith, PLoS Med 2010). Furthermore, epigenetic variation can contribute to the development of a disease or be a consequence of it. Although distinguishing the direction of causation represents a major challenge for epigenetic studies, epigenome-wide association studies (EWAS) can contribute novel molecular insights into the genetic and environmental determinants of disease-related phenotypes (Relton & Davey Smith).

We propose to conduct an EWAS exploring epigenetic markers associated with fatty acids (FAs). Polyunsaturated FAs are involved in key biological processes, including inflammatory responses, gene expression and cellular fluidity (Nakamura et al. Ann Rev Nutr 2004). Omega-3 and Omega-6 are the two main classes of polyunsaturated FAs and imbalance in the ratio of omega-6 to Omega-3 FAs and/or deficiency in omega-3 FA has been associated with adverse outcomes such as cardiovascular disease and diabetes (Yashodhara et al. J Postgrad Med 2009). Assessing epigenomic variation related to FAs may uncover novel biological insights into the role of FAs in health and disease.

Additionally we would like to utilize SNPs either related to fatty acids or methylation, to perform bidirectional MR analyses to tease out any possible causal relationships underlying methylation-fatty acid associations.

Date proposal received: 
Thursday, 9 July, 2015
Date proposal approved: 
Friday, 21 August, 2015
Keywords: 
Epidemiology, Epigenetics, Genetics - e.g. epigenetics, mendelian randomisation, UK10K, sequencing, etc., fatty acids

B2513 - Sex specific association of asthma with DMRT1 variants - 21/08/2015

B number: 
B2513
Principal applicant name: 
John Henderson | ALSPAC
Co-applicants: 
Dr. Maximilian Schieck, Prof. Michael Kabesch, Prof Marieke Boezen
Title of project: 
Sex specific association of asthma with DMRT1 variants.
Proposal summary: 

A gene (DMRT1) was found to be associated with asthma in a Dutch study. This failed to replicate in ALSPAC; the effects were in the opposite direction to those found in the discovery cohorts and other replication samples. We are investigating the reasons for this by doing some further analyses of the genetic variants in his region.

Date proposal received: 
Tuesday, 18 August, 2015
Date proposal approved: 
Friday, 21 August, 2015
Keywords: 
Genetics, Allergy, Respiratory - asthma, GWAS, Genetics - e.g. epigenetics, mendelian randomisation, UK10K, sequencing, etc., Sex differences

B2495 - Apgar scores and long term growth health ann development

B number: 
B2495
Principal applicant name: 
Abigail Fraser | MRC IEU at the UoB (United Kingdom)
Co-applicants: 
Dr. Laura Howe, Prof. Debbie Lawlor
Title of project: 
Apgar scores and long term growth, health ann development
Proposal summary: 

The Apgar score is widely used as an index of early neonatal condition. It has been shown to be associated with an increased risk of neonatal and infant death. However, no studies have assessed whether Apgar scores are associated with outcomes such as growth, development and health in the longer term.

Date proposal received: 
Friday, 17 July, 2015
Date proposal approved: 
Friday, 14 August, 2015
Keywords: 
Epidemiology, Pregnancy - e.g. reproductive health, postnatal depression, birth outcomes, etc., Statistical methods, Birth outcomes, Blood pressure, BMI, Cardiovascular, Growth, Puberty

2504 - Methylomics of adolecent anorexia nervosa

B number: 
2504
Principal applicant name: 
Helge Frieling | Hannover Medical School - Department of Psychiatry (Germany)
Co-applicants: 
Vaness Buchholz, Prof. Nadia Micali, Rory Wilson
Title of project: 
Methylomics of adolecent anorexia nervosa
Proposal summary: 

Anorexia nerovsa is a severe mental illness most often affecting adolescent girls. The etiology of the disorder is complex and involves genetics as well as environmental aspects. We have shown that epigenetic factors can contribute to the disorder. In the current Project, we have already measured epigenetic marks (i.e. DNA methylation) on a genome-wide level in girls participating in a psychotherapy-trial for anorexia nervosa. We want to compare our findings to the data from girls participating in the ALSPAC study that show no signs of an eating disorder.

Date proposal received: 
Monday, 3 August, 2015
Date proposal approved: 
Friday, 14 August, 2015
Keywords: 
Genetics, Eating disorders - anorexia, bulimia, Epigenetics, Genetics - e.g. epigenetics, mendelian randomisation, UK10K, sequencing, etc.

2492 - The joint development of health skills and education

B number: 
2492
Principal applicant name: 
Niels | Erasmus School of Economics, Erasmus University Rotterdam (Netherlands)
Co-applicants: 
Hans van Kippersluis, Roy Thurik
Title of project: 
The joint development of health, skills and education
Proposal summary: 

There exists a persistent and strikingly large correlation between education and health. For example, in the Netherlands, the higher educated can expect to live 20 years longer in good health compared with individuals who finished only primary school. Despite the stark correlation, studies carefully addressing causality suggest that the causal effect of education on health is much smaller than the correlation suggests (Van Kippersluis et al. 2011; Meghir et al. 2012; Clark and Royer, 2013). This apparent contradiction can be explained either by a strong effect of health on educational attainment, or alternatively by the same set of individual characteristics (e.g. time preference, cognitive ability) strongly affecting both health and educational attainment.

A recent series of papers by Conti and Heckman (2010), Conti et al. (2010), and Bijwaard et al. (2015) use birth cohort data with an extensive set of early childhood characteristics to disentangle the effect of (i) education and (ii) early childhood cognitive and non-cognitive skills, on health outcomes. The results show that for most health outcomes at least half of the association between education and health is driven by cognitive and non-cognitive abilities and early childhood social background.

The set of characteristics available in the birth cohorts used is comprehensive, and this series of papers has substantially improved our understanding of the association between education and health. However, the list of characteristics is not exhaustive. In particular, two potentially important channels are missing: (1) the effect of health on educational attainment is measured poorly by imperfect proxies such as childhood height, or is even entirely absent, and (2) the role of genes is not studied at all. That is, education and health may share a common genetic architecture, in which the same set of genes influence both education and health outcomes (biological pleiotropy). This is the hypothesis we intend to test in this project.

Recently, Boardman et al. (2014) have shown that indeed there is genetic correlation between education and health. However, as these authors rightly point out, this correlation does not shed light on the underlying mechanism. The genetic correlation does not imply biological pleiotropy, but could also occur due to mediation pleiotropy (for example, genetic factors influencing health, and in turn health influencing educational attainment).

Biological pleiotropy is best studied on the level of individual genetic variants (Solovieff et al., 2013). However, current methods seem not able to provide definitive answers here, because individual genetic variants have only limited explanatory power. Therefore, we propose two strategies to improve our understanding of the relation between health and education.

References:
Bijwaard, G.E., Van Kippersluis, H., & Veenman, J. (2015). “Education and health: The role of cognitive ability”, Journal of Health Economics, 42: 29-43.
Boardman, J.D., Domingue, B.W., & Daw, J. (2014). “What can genes tell us about the relationship between education and health?”, Social Science & Medicine, doi:10.1016/j.socscimed.2014.08.001.
Clark, D., & Royer, H. (2013). “The effect of education on adult mortality and health: Evidence from Britain”, American Economic Review, 103: 2087-2120.
Conti, G., & Heckman, J.J. (2010). “Understanding the early origins of the education-health gradient: A framework that can also be applied to analyze gene-environment interactions”, Perspectives on Psychological Science, 5: 585-605.
Conti, G., Heckman, J.J., & Urzua, S. (2010). “The education-health gradient”, American Economic Review Papers and Proceedings, 100: 234-238.
Meghir, C., Palme, M., & Simeonova, E. (2013). “Education, cognition and health: Evidence from a social experiment”, NBER Working Paper 19002.
Solovieff, N., Cotsapas, C., Lee, P.H., Purcell, S.M., & Smoller, J.W. (2013). “Pleiotropy in complex traits: challenges and strategies”, Nature Reviews Genetics, 14: 483-495.
Van Kippersluis, H., O'Donnell, O., & Van Doorslaer, E. (2011). Long run returns to education: Does schooling lead to an extended old age?", Journal of Human Resources, 46: 695-721.

Date proposal received: 
Thursday, 16 July, 2015
Date proposal approved: 
Friday, 14 August, 2015
Keywords: 
Health Economics

B2509 - Revealing The Metabolic Profile of HDL Gene Variants Associated with CHD

B number: 
B2509
Principal applicant name: 
Ghazaleh Fatemifar | London School of Hygiene and Tropical Medicine (United Kingdom)
Co-applicants: 
Professor Juan Pablo-Casas, Dr. David Prieto, Dr. Amy Cassidy , Dr Diana Dos Santos Ferreira, Professor Debbie Lawlor
Title of project: 
Revealing The Metabolic Profile of HDL Gene Variants Associated with CHD
Proposal summary: 

Lipoproteins such as high density lipoprotein (HDL) and low density lipoprotein (LDL) are commonly studied in both epidemiological and genetic studies. However, their simple classification undermines the complexity of these lipoproteins with respect to size, composition and roles in metabolic pathways. For example, results for the association between HDL and coronary heart disease (CHD) are mixed with regards to the direction of effect. Conversely, the association between genetic variants associated with LDL and CHD appear to be much more uniform. Therefore, If HDL is to be regarded as a valid biomarker for drug targets, all genetic variants associated with HDL should have a corresponding consistent effect.
To date, studies may lack power to determine the effect of HDL on CHD. In addition, HDL-C as conventionally measured may not be sufficient biomarker to allow associations to be revealed. Therefore, before discarding the potential of the HDL to CHD, it is worth considering additional biomarkers that better characterise the full complexity of the pathway.
This new project is based on using genetic variants residing in genes associated with HDL-C (as reported by the Global Lipid Consortium) and testing their association with HDL related NMR metabolites. In addition, we are extending our analyses to test the association between HDL related genetic variants and scores developed from HDL metabolites which were generated using factor analysis, in order to determine whether any consistencies exist between the direction of effect and factors of HDL metabolites.

Date proposal received: 
Thursday, 23 July, 2015
Date proposal approved: 
Friday, 14 August, 2015
Keywords: 
Genetics, CHD, Metabolomics, NMR, Cardiovascular, Genetics - e.g. epigenetics, mendelian randomisation, UK10K, sequencing, etc.

B2505 - Early life DNA methylation patterns linking intra-uterine events to adverse cardiometabolic outcomes

B number: 
B2505
Principal applicant name: 
Alexander Drong | Wellcome Trust Centre for Human Genetics, University of Oxford (United Kingdom)
Co-applicants: 
Prof Cecilia Lindgren, Dr Nicholas Timpson
Title of project: 
Early life DNA methylation patterns linking intra-uterine events to adverse cardiometabolic outcomes
Proposal summary: 

Complex diseases are typically caused by a mixture of genetic, environmental and epigenetic effects. A number of prenatal risk factors, including intra-uterine growth restriction (IUGR) and gestational diabetes mellitus (GDM), have been shown to determine signatures in the blood methylome. However, most studies on this topic fall short are underpowered, or fail to take genetic effects into account to investigate causality. Birth cohorts with multiple tissue samples and deep phenotyping offer an opportunity to investigate the interplay of genetics, epigenetics and the environment affecting foetal and child growth. Moreover, my project aims to specifically determine which changes in DNA methylation are causal to subsequent disease states by combining genetic and epigenetic data in Mendelian Randomization experiments. The discovered results can then be used to develop biological tools to detect children at risk stratify risk groups and develop prevention strategies.

The work I propose to undertake follows on from my recent research in cross-sectional epigenome-wide association studies (EWAS) for T2D and obesity In adults (Wahl*, Drong* et al. under review). However, I have found previously that most of the strongest signals of methylations associations display a reverse causal relationship. I am thus interested to investigate the influence of early-life events, such as foetal growth and gestational diabetes (GDM) on patterns of DNA methylation. To achieve this, I aim to employ quantitative skills to develop robust methodology to take into effect confounding effects from experimental confounders (mixture of foetal/maternal tissues), maternal/paternal genotypes and to develop a robust, reusable pipeline for Mendelian Randomization in birth cohorts. Ultimately, I aim to link epigenetic markers both identified for GDM and IUGR with future health outcomes, and develop biomarkers for the effects.

Firstly, I aim to apply my analysis methodology to utilise the rich data sets curated by the proposed research sponsors to detect associations of DNA methylation with a number of phenotypes. I will perform a large scale EWAS case/control studies for GDM. Secondly, I will lead for the analysis of epigenetic data from biological samples for IGUR in the INTERBIO-21 study. This includes development of the experimental designs for large-scale epigenome-wide association scans. Lastly, I will be utilizing genetic variants as instrumental variables in two-step Mendelian Randomization to determine whether epigenetic markers are in causal pathways linking intra-uterine events to the child's phenotypes. Thus I will apply an informed approach about causality to separately detect genetic associations to avoid bias and will be able to detect maternal genetic and epigenetic confounding.

This will allow me to be in a unique position by extending the scope of simple cross-sectional EWAS to include not only causal analysis, but also a robust characterisation with respect to biological and technical confounders.
By focussing my hypothesis on causal pathways, my work can filter out reverse-causal confounders facilitate personalised prevention and novel drug target discovery. If successful, my research will provide accurate tools to guide childhood interventions through early biomarkers of the intrauterine environment.

Date proposal received: 
Wednesday, 22 July, 2015
Date proposal approved: 
Friday, 14 August, 2015
Keywords: 
Genetics, Diabetes, Obesity, Pregnancy - e.g. reproductive health, postnatal depression, birth outcomes, etc., Computer simulations/modelling/algorithms, Epigenetics, Gene expression, Statistical methods, Biomarkers - e.g. cotinine, fatty acids, haemoglobin, etc., Environment - enviromental exposure, pollution, Growth, Metabolic - metabolism, Methods - e.g. cross cohort analysis, data mining, mendelian randomisation, etc., Nutrition - breast feeding, diet

Pages