B3176 - Identifying blood-based DNA methylation biomarkers of cannabis use - 11/09/2018

B number: 
B3176
Principal applicant name: 
Christina Markunas | RTI International (RTP, NC, USA) (USA)
Co-applicants: 
Eric Johnson, PhD, Dana Hancock, PhD
Title of project: 
Identifying blood-based DNA methylation biomarkers of cannabis use
Proposal summary: 

Cannabis is the most commonly used illicit drug in the US, with 14% of Americans aged 12 or older reporting use during 2016 and 44% reporting lifetime use. Both acute (e.g., impaired motor function) and chronic health effects (e.g., dependence, cognitive function) of cannabis use have been reported. However, efforts to assess the scope of the adverse effects are hampered by under-reporting and the lack of available biomarkers which can reliably quantify cannabis usage patterns. Thus, there is a need to develop robust biomarkers of exposure to more accurately identify usage patterns in order to monitor those in treatment for adherence, fill-in missing cannabis use history, and/or predict health consequences. DNA methylation (DNAm) represents an excellent candidate for biomarker research, as it has the potential to differentiate acute vs. chronic exposure, timing of exposure, and cumulative exposure.

The overarching goal of the study is to identify the first reliable and useful blood-based DNAm biomarkers for cannabis use phenotypes. To achieve our goal, we propose to leverage the ALSPAC study, along with existing data from ~7 other cohorts to conduct the largest epigenome-wide (genome-wide DNAm) meta-analysis for any cannabis use phenotype to date (N~10,000 individuals across cohorts). From this, will identify and validate DNAm biomarkers of cannabis use representing general biomarkers (i.e., without regard to the etiology of the DNAm differences, possibly providing the greatest overall predictive ability), and those enriched for either exposure- or genetically-driven effects (i.e., DNAm as a mediator between genetic variants and cannabis use).

Impact of research: 
Results from these aims will set the stage for primary data generation to directly address more complex phenotypes like cannabis use disorder and to evaluate the utility of these biomarkers as refined phenotypes in genetic studies or as predictors of cannabis-related health effects (e.g., cognitive effects).
Date proposal received: 
Tuesday, 11 September, 2018
Date proposal approved: 
Tuesday, 11 September, 2018
Keywords: 
Genetic epidemiology (including association studies and mendelian randomisation), Addiction - e.g. alcohol, illicit drugs, smoking, gambling, etc., GWAS, Statistical methods, Epigenome-wide association study (EWAS) Mendelian Randomization cis-methylation quantitative trait loci (cis-meQTL mapping) mapping, Biomarkers - e.g. cotinine, fatty acids, haemoglobin, etc., Epigenetics, Genetic epidemiology, Genome wide association study, Mendelian randomisation, Statistical methods, Epigenome-wide association study (EWAS)