Proposal summaries
B2591 - Paracetamol use during pregnancy and behavioural problems during childhood - 14/01/2016
Paracetamol is one of the most common pain relieving medications and is considered generally safe for use during all stages of pregnancy making it the first choice pain and fever medication for pregnant women. However, paracetamol use during pregnancy is associated with higher risk of hyperkinetic disorders and ADHD-like behaviours in large populations cohorts (Liew et al 2014).
B2590 - Dietary predictors of environmental exposures in pregnancy and childhood - 14/01/2016
Toxic metals and other harmful chemicals can be found in a number of foods, because of the way these foods are grown, processed or packaged for sale and consumption. The diet may be an important source of toxicant exposure for people who consume these foods. Several studies have shown that toxicant levels in food products are related to the levels of these chemicals in the human body. For example, processed grain products, rice, milk, dairy and baby foods were among the most important sources of inorganic arsenic exposure in European populations. However, there have been few studies to look at dietary predictors (particularly dietary patterns) in pregnancy and toxicant exposure in women and their offspring.
B2589 - BBMRI Metabolomics consortium - 27/01/2016
Recently a number of metabolic biomarkers have shown a correlation with the overall mortality (Fischer et al. DOI: 10.1371/journal.pmed.1001606). The biomarker profiling can improve prediction of the short-term all factor mortality above established risk factors. This effort is part of the BBMRI Metabolomics consortium to further investigate these associations and clarify the biological mechanisms involved.
B2587 - Epigenome-wide analysis of the onset and persistence of childhood psychotic experiences 10/05/2015 - 0113 - 27/07/2016
Psychotic experiences are reported by 1 in 20 children at around 12 years of age and include paranoid thoughts, hearing or seeing things that others do not, and believing that others can read one’s mind. These experiences are often distressing and predictive of schizophrenia, other psychiatric disorders and suicide in adulthood, particularly if they persist during adolescence. Therefore, uncovering biomarkers associated with the onset and persistence of these childhood psychotic experiences is urgently required to facilitate early identification of individuals at increased risk in order to optimally target preventive interventions.
Changes in epigenetic processes, such as levels of DNA methylation, could be one potential biomarker of the emergence and persistence of childhood psychotic symptoms. These epigenetic processes have the potential to influence the degree to which our genes are expressed. Differential levels of DNA methylation at specific locations across the genome have been found between adult identical twins discordant for clinically-relevant psychosis and in a small sample of identical twin children discordant for childhood psychotic experiences. However, it is not yet known whether similar findings will be observed in a larger cohort of non-twin children, and which differences are indicative of the persistence of early psychotic symptoms. The proposed study will therefore explore whether there are specific genomic sites where levels of DNA methylation vary (at birth and across childhood) between individuals with and without psychotic experiences in childhood, and in those whose experiences persist compared to those whose experiences have remitted and those who have never had psychotic experiences.
B2586 - PheWAS of multiple sclerosis genetic risk score - 04/12/2015
Genetic variants for multiple sclerosis (MS) have been identified. We will calculate MS genetic propensity scores for ALSPAC mothers and offspring. We will screen ALSPAC to identify phenotypes that are associated with genetic propensity to MS in individuals without the disease.
B2582 - Genetics of traits related to autism spectrum condition - 03/03/2017
Autism and other psychiatric condition can be viewed as being dimensional. Individuals diagnosed with autism have difficulties in empathizing and emotion recognition, while have preserved or higher than average systemizing abilities when compared to regular controls. We have collaborated with 23andMe to perform a GWAS of three psychological traits - empathy, systemizing and theory of mind. In this study, we will use data from this study and other measures of communication ability, occupation, empathy, and theory of mind to identify genes that contribute to these traits. We will investigate if these traits can be used to stratify individuals within the autism spectrum.
B2581 - The relationship of small and large for gestational age defined by different criteria to postnatal growth - 04/12/2015
Babies born small or large are more likely to have health and development problems than those of a 'normal' size. But in reality it is difficult to know just what a small or large size is. A common measure that has been used in lots of studies is to take account of how far on the mother was in her pregnancy at the time their child was born. This allows us to tell the difference between, for example, a baby who is small because they delivered too early but might have been growing normally in the womb and one who is small because they were undernourished and did not grow properly in the womb. Similarly it allows us to tell the difference between a baby who might be large because they stayed in the womb for longer than average and one who grew too rapidly because they were overnourished. Calibrating birth size against how long a woman has been pregnant is done using growth charts, similar to those used to plot an infants growth after they are born. Until recently these charts have reflected average growth patterns for a specified population. For example if a baby today was plotted on a UK 2000 growth chart of birth weight for gestational age and they were on what was called the 50th percentile. This would indicate that their weight was the same as the average for all other babies of the same sex and who had had the same time in the womb who were born in the UK in 2000. Recently it has been suggested that instead of those total population averages 'customised growth charts' should be used to define whether a baby is too heavy or light after accounting for how long they have been in the womb. As well as time in the womb these 'customised growth charts' take account of what are assumed to be characteristics that affect fetal growth in a 'biological' (non-pathological) way: the mother's weight and height at first clinic, her ethnicity, whether this is her first, second, etc child. These charts are somewhat controversial as on the one hand they might be correctly allowing for 'biological' differences in size but on the other they might (for example) be assuming that it is normal for a particular ethnic group to always be smaller than another ethnic group which might not be the case.
B2568 - Genome-wide analysis of early skeletal growth using 1000 Genomes imputed data - EGG consortium
Common genetic variants have been identified for length and head circumference in children and adults. In a previous genome-wide association (GWA) study two single nucleotide polymorphisms (SNPs) were found to be associated with head circumference in childhood. Additionally, 1 SNP was found to be associated with length in early life. However, these studies used datasets imputed to the Hapmap reference panel, consisting of 2.5 million SNPs. Since then, a more detailed reference panel has become available, the 1000 genomes reference panel, which offers the opportunity to identify more and better imputed SNPs. In addition, the number of studies with GWAs data has increased. Therefore, we will be able to analyze more samples, giving us a larger power to detect associations.
B2585 - ERANID Understanding drug use pathways
When reaching their early twenties, almost 60% of the participants of the contemporary Dutch TRAILS and ALSPAC study confirm to have used cannabis at some point in their life, one in five has used ecstasy, and around one in ten young adults has used amphetamines, cocaine, or magic mushrooms. Given the adverse effects of adolescent drug use on adult outcomes, these numbers are alarming. Why do so many young people experiment with drugs? How many of them are regular users? Is the use of illicit drugs systematically linked to alcohol and tobacco use? How are temporary and chronic use reflected in psychosocial adjustment and accomplishment of normative development milestones? Perhaps most pressing, can we identify protective factors that increase the likelihood for youngsters to abstain and users to desist from using drugs before they can leave lasting damage? Answering those questions is crucial to understand drug use pathways and their antecedents and outcomes, through the life course.
Focussing on incidence and course of illegal drug use throughout adolescence and young adulthood, we aim to a) identify predictors of onset of experimental and regular use of cannabis and hard drugs, b) predict the developmental trajectories of cannabis and hard drug use, and c) identify outcomes of these trajectories. Cannabis and hard drug use are no isolated phenomena, they occur in interplay with use of other substances such as tobacco and alcohol use and are often connected to mental health problems from the internalizing and externalizing spectrum. Hence, co-developmental pattern and interactive and cumulative risks are identified.
Two major multi-reporter longitudinal cohort studies provide the data for this project: The British Avon Longitudinal Study of Parents and Children (ALSPAC, http://www.bristol.ac.uk/alspac/) is an ongoing study of 14.500 families where the first assessment took part during pregnancy and the target sample of young people has now reached the mid-twenties. Repeated measures of dDrug use have been collected xx times s been assessedon an annual or semi-annual basis from age 10 [link to questionnaires][how often] using [instrument]. Extensive contemporaneous information is available including on early life, family adversity, social position, neighbourhood, school, temperament, externalising and internalising problems, and peer drug use[covariate, risk, protective factors] are available. The Dutch TRacking Adolescents’ Individual Lives Survey (TRAILS, www.trails.nl/en/) is an ongoing study of 2261 individuals who were recruited into the study at age 11 and are now also in their mid-twenties. Drug use has been assessed [how often] using [instrument]. Extensive information on [covariate, risk, protective factors] are available. The liberal Dutch climate towards drug use, specifically the tolerance policy towards cannabis possession and production is in stark contrast to the British perspective where cannabis is criminalized. By comparing two cohorts of equal age, we are able to identify the role of the cultural context, a thus far severely under-researched aspect.
B2579 - MR-Base an online resource for Mendelian randomization using summary data - 04/12/2015
We will implement genome-wide association analyses of every disease and biomarker in ALSPAC (where sample sizes allow). The summary associations from these analyses, e.g. log odds ratios and standard errors, will be harmonized with summary association data from other genome wide association studies and deposited into the MR-base online tool (www.mrbase.org). External researchers will be able to implement Mendelian randomization
analyses of their exposures of interest against all diseases and biomarkers curated by MR-base.
B2578 - Affective Capital and Intergenerational Mobility - 10/05/2017
Recent studies on humans and animal models indicate that stress in parents alters both parenting behaviors and parental epigenetics, which can be inherited. As a consequence, stressors in parents can transmit to the offspring, causing depression-like behavior in the descendants of stressed parents or grandparents. In turn, depression-like behavior results in decreased goal-directed activity, and depression associates with unemployment, poverty, and other adverse socioeconomic outcomes in humans. Because poverty can be stressful, and indeed depression rates are higher for the impoverished, this intergenerational transfer of the effects of stress might be an important mechanism impeding intergenerational mobility. In the language of economics, parents provide their children with a type of human capital—which I term ‘affective capital’—through their genetic and epigenetic bequests and through their parenting investments. The children carry this capital with them into adulthood, where it protects children from anxiety and depression, influencing their educational and labor market choices as well as their own parenting behavior, propagating through multiple generations.
My project aims to elucidate the roll of epigenetics, genetics, and parenting behavior in the intergenerational transmission of affective capital as well as the impact of this transmission on intergenerational mobility.
B2573 - How to construct a healthy diet The combined effect of dietary patterns and eating architecture on cardiometabolic health - 24/05/2016
Obesity, diabetes and heart disease collectively place an enormous burden on the health service. Losing those extra pounds once you’ve gained them is really hard, so prevention of weight gain is really important to stop health costs spiralling out of control. We’ve previously shown that a diet that is packed full of energy, fat and too low in fibre is associated with obesity in children and teenagers. It’s likely this type of diet is linked to diabetes and heart disease too, so we plan to look into that using information already collected combined with the 24+ clinics and new online records of food intake completed at 25+. As well as the type of food you eat the way that you eat in terms of the size, timing and frequency of eating occasions, could also be important for stopping too much weight gain. Furthermore, matching up your food intake to your internal metabolic clock may reduce the risk of diabetes and heart disease too. We will use the detailed reports of food intake at age 7, 10, 13 and 25 years to find out the exact time when eating happened to test whether the old mantra “Breakfast like a King, Lunch like a Prince, and Dine like a Pauper” is actually important for obesity and metabolic health. We’ll use these results to know more about how to construct a healthy diet on a personal level based on the combined effect of what, when and how much food is eaten.
B2577 - Accuracy of clinical characteristics biochemical and ultrasound markers in the prediction of pre-eclampsia an IPD - 03/12/2015
Despite advances in maternal medicine, pre-eclampsia continues to be a major contributor to maternal, fetal and neonatal mortality and morbidity. Pre-eclampsia is not a single disorder but a syndrome. The early onset disease is more severe, and is considered to have different pathophysiology than the late onset disease. It is unlikely that one single model will accurately predict both early and late onset disease. A brief by the HTA calls for a systematic review on the predictive accuracy of markers, separately and in combination for predicting pre-eclampsia, especially early onset disease. We have identified 59 systematic reviews on clinical characteristics, biomarkers and ultrasound in the prediction of pre-eclampsia, including our HTA report (HTA No. 12060), and 69 prediction models for pre-eclampsia.
However, clinical applicability of the aggregate meta-analyses is limited due to the observed heterogeneity in population, test characteristics including timing and cut off, and outcomes. Furthermore, they often do not account for multiple predictors, and are mainly focussed on any pre-eclampsia than early onset. An Individual Patient Data (IPD) meta-analysis will allow us to assess the differential accuracy of the tests in various subgroups according to the risk status. It will provide us with sufficient sample size to develop and validate a multivariable prediction model, for the clinically important outcome of early onset pre-eclampsia. Furthermore, by taking into account the clustering within studies, the developed model will avoid the model performance deterioration encountered in aggregate meta-analysis, when the individual’s baseline risk is different from the average estimated during model development.
Prior to use of prediction models in clinical practice, there is a need to successfully validate the model in multiple datasets external to the model development phase. This often takes many years to accomplish. None of the prediction models have robustly undertaken external validation to assess model performance in relevant population. Our International Prediction of Pre-eclampsia IPD Collaborative Network (IPPIC) of global researchers has provided access to the IPD from existing studies and large databases, thereby allowing us to both develop and validate the risk prediction models simultaneously, within an IPD meta-analysis framework. Our collaborative approach encourages consensus towards a single, well developed, and validated prognostic model, rather than a number of competing and non-validated models for the same clinical question.
B2576 - Hospital admission in wheezing children - 27/11/2015
Asthma is a variable illness in children, with differences in presentation, progression and severity across childhood. A gene has been discovered that appears to be specific for a particular form of early asthma, persistent troublesome wheeze. Troublesome in this context means having attacks that need hospital visits. We woudl like to replicate this finding by adding information to our existing models of early childhood wheezing.
B2584 - The role of dietary patterns in the early pathogenesis of cardiometabolic diseases - 11/12/2015
The development of cardiovascular diseases can start at an early age, although the clinical manifestations commonly appear in adulthood. Previous studies have reported that the adherence to an overall healthy dietary pattern is associated with a lower risk of cardiovascular events and cardiovascular mortality among adults. However, there are few reports on the association of dietary patterns with cardiometabolic risk factors and cardiovascular structure and function before the clinical manifestations of cardiovascular diseases among adolescents.
The objective of this study is to assess the association of dietary patterns at the age of 7, 10 and 13 years with cardiometabolic risk factors and cardiovascular structure and function at the age of 17 years.
The study population will be 2 121 adolescents participating in the ALSPAC, a 50 % subsample of clinic attendees at the age of 17 years. Measures of cardiometabolic risk factors include fasting concentrations of glucose, insulin, triglycerides, total cholesterol, HDL cholesterol and LDL cholesterol, systolic and diastolic blood pressure, and a cardiometabolic risk score. Measures of cardiovascular structure and function included carotid intima-media thickness, artery stiffness and endothelial function. Dietary intake was assessed by 3-day food records at the age of 7, 10 and 13 years. Dietary patterns were extracted using principal component analysis. The associations of dietary patterns with cardiometabolic risk factors and cardiovascular structure and function will be analyzed using multiple linear regression models adjusted for potential confounding factors.
The proposed study will be conducted in 2016.
B2580 - Emotion regulation strategies during adolescence from genes to academic performance - 28/06/2017
Emotions are important in providing motivation for our goals. They can affect our memory and decisions about how we interact with our environment and other people. However emotions also need regulating, for example by telling ourselves we don’t need to be scared of a spider as it is on the television. Difficulties in regulating emotion are increasingly being recognised as a key factor behind many mental health issues and can have negative effects more widely on academic performance, personal relationships and well-being.
Adolescence is an important time for developing the ability to regulate emotions. Changes in the brain related to cognitive, social and emotional control lead to the development of new regulation strategies. Adolescence is also when many mental health issues begin, making it an important time to investigate emotion regulation. Here, we aim to identify how different aspects of emotion regulation relate to developing cognitive control abilities, such as the ability to inhibit impulsive responses.
Studies of individuals that link brain and behaviour to genetic variation in a handful of pre-specified genes have provided early evidence of a role for genetic influences on emotion regulation. As yet, no studies have assessed the bulk contribution of common genetic variation to emotion regulation, or surveyed the entire genome in an unbiased way to identify specific genetic variants associated with emotion regulation. Understanding genetic influences underpinning emotional regulation will enable us to link genes, the brain and behaviour to better understand how brain systems develop during this critical period.
B2563 - Pathways to Alcohol Use Disorders in ALSPAC A Genetic-Developmental Study - RENEWAL 10/23/2015 - 1149 - 02/12/2015
To explore genetic, biomedical and environmental predictors of and consequence of alcohol use and misuse.
B2571 - The causal ins and outs of the human microbiome - 20/05/2016
The proposed research has one clear overarching objective. This is the application of causal analysis approaches to the investigation of the human gut microbiome. Proposed work will (i) generate predictors of the microbiome to assess causal contributions to disease, (ii) use existing causal predictors of human disease risk factors to assess the impact of these on the microbiome and (iii) use genetic variation previously associated with extremes of gut health to design a human Recall by Genotype (RbG) experiment which will assess the causal link between genetic risk, gut flora and pre-morbid disease.
The human gut microbiome is the collection of non-human organisms which abide and interact with the human gut. Although the faecal microbiome remains understudied as a proxy for gut flora, the beginnings of large, population based, collections of microbial variation are now showing important patterns suggestive of contributions to human health. Clinical and questionnaire-based covariates have not only been shown to be associated with microbiota composition, but they stably explain substantive portions of variation in gut flora. These first steps in the characterization and analysis of the microbiome at scale mark a new stage in the epidemiological analysis of the microbiome.
In parallel to this developing field, I have been developing and employing methods for causal analysis in complex epidemiological scenarios. My work has been intimately involved in the discovery of genetic associations with complex traits and the use of these in applied epidemiological contexts. Research has built on the development and application of causal analysis approaches and coincident work in the field of complex disease/phenotype genetics. The human microbiome is a logical target for the application of causal methods as (i) the microbiome field is attracting marked attention, but in a manner not directed by causal analyses, (ii) observational associations found with human microbiome measurement are strong and compelling, but are likely to be suffering from classical problems of observational epidemiology and (iii) if associations are causal, the human microbiome is an extremely attractive therapeutic target for the development of future therapeutic interventions as it is malleable. This proposal which will unite large-scale, population based, collections of human microbiome data and applied epidemiological analyses to allow causal analysis of relationships of variation in human gut flora.
This work will be challenging given complexities in measurement of the human gut microbiome, the assessment of genuine human autosomal genetic contributions to variation in patterns of gut flora, the application of results to the analysis of human disease and the ability to assess risk factors which themselves shape the microbiome. However, these challenges will be met by bringing together resources and expertise from the MRC Integrative Epidemiology Unit (IEU) at the University of Bristol (applied genetic epidemiology, PI Timpson and the Avon Longitudinal Study of Parents and Children), Leuven University (the human gut microbiome, collaborator Raes and the Flemish Gut Flora Project) and King’s College London (genetic epidemiology and the collection of human gut flora data, collaborator Spector and Twins UK).
B2583 - Picky eating in childhood psychological correlates and longitudinal outcomes - 03/12/2015
BACKGROUND: Picky/selective eating is a common behaviour in children, that can range from being a normal phase in child development to a severe problem that causes negative physical and psychological consequences for the child and greatly impacts families. We still know very little about which children with picky/selective eating require assessment and treatment.
Picky/selective eating is one of the most common eating problem reported by parents, and a common reason for seeking medical help by parents, however very little research is available on its manifestations in the general population. This sub-study is part of a larger study focusing on understanding picky/selective eating in clinical and population-based samples.
OBJECTIVES: This study will focus on picky/selective eating, its psychopathological correlates (anxiety, depression, ASD traits, and other psychopathology), its relationship with parental anxiety and depression and its outcomes in terms of disordered eating in adolescence.
B2569 - Genotype-Phenotype Associations in Poor Readers
Nearly one in ten school-age children struggles with learning to read and spell. Reading disorders can run in families and there may be a genetic cause for some children. Children with reading disorders are at risk for anxiety and depression, as well as lower job obtainment in adult years. Despite affecting millions of children much is still unknown, including exactly which genes cause reading disorders. We think that different behavioral profiles of reading disorders result from different gene variations. Furthermore, there is evidence reading disorders are resulting from a number of genes acting together. We will explore how different behavioral profiles relate to gene variants, as well as how genes interact with each other in children with reading disorders.