Proposal summaries
B2847 - Assessing the impact of parental smoking on genetic variation in offspring Y chromosome - 08/03/2017
Tobacco smoke is a complex mixture of chemicals, known to cause genetic and epigenetic aberrations (1). The genetic aberrations caused by tobacco smoke are detected in both the directly exposed (e.g. lung) and unexposed tissues (e.g. blood) (2). Most of the previous studies have looked at the germline mutation with a rationale that a vast majority of cells in the human soma are genetically identical and is stable across the human lifespan. However, the field of human genetics is increasingly recognising that genetic variation acquired during life (i.e., post-zygotic changes) (3). A recent study by Dumanski et al. found that men who smoke are thrice more likely to show post-zygotic loss of Y chromosome (LOY) in their blood cells suggesting that LOY was by far the most common postzygotic mutation (4). However, the differential impact of parental smoking on LOY in male offspring remains unexplored.
The Avon Longitudinal Study of Parents and Children provides a unique opportunity to delineate the genetic impact of parental smoking on offspring sex chromosomes at birth and to study the persistence of these events longitudinally.
References:
1. Humans IWGotEoCRt. Personal habits and indoor combustions. Volume 100 E. A review of human carcinogens. IARC Monogr Eval Carcinog Risks Hum 2012;100(Pt E):1-538.
2. Lee KW, Pausova Z. Cigarette smoking and DNA methylation. Front Genet 2013;4:132.
3. Dumanski JP, Lambert JC, Rasi C, Giedraitis V, Davies H, Grenier-Boley B, et al. Mosaic Loss of Chromosome Y in Blood Is Associated with Alzheimer Disease. Am J Hum Genet 2016;98(6):1208-19.
4. Dumanski JP, Rasi C, Lonn M, Davies H, Ingelsson M, Giedraitis V, et al. Mutagenesis. Smoking is associated with mosaic loss of chromosome Y. Science 2015;347(6217):81-3.
B2854 - Psychosocial factors and the risk of cancer a pre-planned meta-analysis of the PSYchological factors and CAncer consortium - 22/06/2017
We will examine whether depression is related to the development of cancer by summing results of 18 large studies. We will examine whether depression predicts cancer only in some groups of individuals, for example males. In addition we will examine whether depressed individuals live less healthy, for example smoke more, and whether this is the reason they are more likely to develop cancer.
B2850 - LIFECOURSE PREDICTORS OF WELLBEING IN EARLY ADULTHOOD - 13/03/2017
Wellbeing is a broad concept encompassing factors such as life satisfaction, emotional health and happiness. Our study aims to provide us with a deeper understanding of child and adolescent developmental pathways to early adult wellbeing. Early adulthood can be stressful, with many major situational changes occurring during this time such as moving away from home, finding a job and starting a family. Good wellbeing can help to ensure a smooth transition from adolescence into adulthood and act as a buffer against life stressors during this time. We wish to investigate both the effects of the distal influences of childhood and the proximal influences of early adulthood in order to contribute evidence to build a lifecourse model of wellbeing. Our study will study a diverse set of wellbeing outcomes, expanding beyond the commonly measured life satisfaction to concepts such as basic psychological needs, meaning in life and gratitude.
B2846 - Parental Job Loss and Offspring Psychological and Physical Wellbeing - 24/04/2017
Most research on parental job loss has focused on the negative outcomes for the adults experiencing it, but much less is known about the effects on their children (Kalil, 2013). Emerging evidence suggests that parental job loss increases the likelihood of poor academic outcomes (e.g., school dropout, grade retention, Kertezi & Kezdi, 2007; Stevens & Schaller, 2011), but the mediating processes for these effects are not well characterized. Furthermore, we know little about the consequences of parental job loss for the offspring’s mental and physical health, or about factors that may promote resilience for youth exposed to this economic stressor. Our team combines expertise from psychology (Guyer, Hastings, Hostinar, Thompson), family sociology (Conger) and economics (Bitler, Page) to address these gaps by examining several questions regarding the effects of parental job loss on youth’s psychological and physical wellbeing. Our research questions are informed by the family stress model (Conger et al., 2010), which posits that adverse economic conditions can be stressful to families and that this stress can shape interactions within the family through parenting practices, parent-child interactions, and interactions between parents, which can lead to poorer health, achievement, and psychological adjustment for children. ALSPAC affords a unique opportunity to test this model through its longitudinal design, allowing us to simultaneously examine (a) associations between childhood exposure to parental job loss and psychological, physical and academic/cognitive outcomes across development, as well as (b) mediating pathways (e.g., altered parent-child interactions; children’s and parents’ stress physiology), and (c) moderators or protective factors (e.g., personality, peer relationships).
B2848 - Maternal depression antidepressant use during pregnancy and autism/autistic traits - 24/02/2017
Depression is common in women of childbearing age and pregnancy. Antidepressants are some of the most common medications prescribed by the NHS. Recent studies have estimated that up to 10% of women in some western countries take antidepressants during pregnancy. Recent studies have raised the possibility of an association between antidepressant use during pregnancy with longer term neurodevelopmental problems such as autism. However, maternal depression may independently be associated with adverse neurodevelopment- potentially confounding the association between antidepressant use and autism.
This study aims to investigate the association of maternal depression or taking antidepressants during pregnancy with offspring risk of autism or autistic traits in ALSPAC.
B2837 - Predicting Risk Resilience for Social and Visceral Health in Response to Childhood Abuse - 27/04/2017
The link between childhood abuse and development of social problems and gastrointestinal disorders is well documented. However, some children exposed to abuse go on to lead relatively undisturbed lives, while others are totally devastated. This analysis will seek to understand whether risk and resilience to traumatic experiences may have an evolutionary foundation by using a framework provided by Polyvagal Theory, which outlines the biological link between neural circuits that regulate body states including gastrointestinal functions (and disorders of other subdiaphragmatic organs) and the regulation of social engagement behaviors (Porges, 2001; 2007; 2011). Within this framework, the function of neural systems that regulate body state during the perinatal period may determine individual differences in the long term consequences of severe childhood stressors and traumatic experiences. Thus, the goal of the proposed analyses is to examine whether perinatal variables, related to visceral regulation, will contribute to the risk for gastrointestinal disorders and social problems following childhood abuse.
B2842 - Causes and consequences of urinary incontinence in women - 15/02/2017
Urinary incontinence (UI) in women is a form of involuntary leakage of urine that affects between 25-45% globally. Several possible UI determinants that have been suggested in the literature include number of children, how they were delivered (vaginally or by C-section), body mass index (BMI), age, hysterectomy, smoking, recurrent urinary tract infection and family history but the reasons for UI remain understudied and poorly understood.
It has been estimated that stress urinary incontinence (SUI) which is an involuntary leakage of urine due to physical efforts ranges from 3% to 25% of elderly women. Quality of life and sexual function are often affected by SUI. The ability to perform activity of daily living may be severely affected by SUI, resulting in embarrassment, social isolation and decrease in health-related quality of life. Women suffering from SUI may avoid participating in physical activity, which in turn impacts on the overall health. Finally, some evidence has shown that up to 50% of women with UI will avoid sexual intimacy with their spouse.
B2838 - The developmental role of metabolism appetite and growth in eating disorders exploring novel longitudinal risk pathways - 03/04/2017
The Eating Disorders (full and partial syndrome anorexia nervosa and bulimia nervosa and binge eating disorder) are life-threatening illnesses that start in adolescence and affect between one and two in ten adolescents and young adults. There is a lack in our understanding of why eating disorders develop, which affects our ability to develop treatment and adequately prevent eating disorders. This project builds on our preliminary data showing that metabolism and growth might play a role in the development of eating disorders; and aims to test the hypothesis that metabolic function, appetite and growth factors might precede onset of eating disorders. We also aim to explore whether these factors might be related to individuals’ genetic make up, using novel methodologies and based on novel genetic findings. This study will be fundamental in starting to understand new risk mechanisms for adolescent and young adult eating disorders that can be further investigated in larger and more detailed studies following this project.
B2840 - Depot specific effect of pre-pubertal IGF-II on post pubertal fat distribution in ALSPAC cohort - 07/03/2017
Insulin like growth factor II (IGF-II) is a hormone. IGF-II levels in the human circulation are maintained at high levels throughout life unlike those of rodents. IGF-II has been strongly linked to obesity in genetic studies but its metabolic role is still far from understood. We were able to confirm using fat biopsies from children that IGF-II is a key regulator of fat cell biology. Our results suggest it acts as a buffer to excess visceral fat accumulation in children.
B2843 - Investigating putative risk factors for neurodevelopmental disorders using Mendelian Randomization 14-02-2017 - 125156 - 15/02/2017
Neurodevelopmental disorders (NDDs) are conditions involving perturbed brain development with manifestations ranging from specific to global impairment of developmental domains such as communication, social interaction, motor skills, cognition, activity and emotion. This includes autism spectrum disorder (ASD), attention-deficit hyperactivity disorder (ADHD), disorders of language, learning and motor functions, intellectual disabilities, schizophrenia and bipolar disorder. NDDs are highly prevalent in the population (~5% of children), typically emerge early in life, and are associated with substantial and long term disability.
The aim of this study to investigate the role of potentially modifiable risk factors for NDDs, using Mendelian Randomization (MR). Multiple pre-/perinatal risk factors are associated with NDDs, including nutritional deficiency (vitamin D deficiency, fatty acids), thyroid dysfunction, inflammation and autoimmune conditions, metabolic conditions, stress, smoking and low birth weight. However, results from epidemiological studies have been inconclusive and the causal role of these risk factors has not been established for most NDDs. Studies using methods that strengthen causal inference are important so that the role of these potentially modifiable risk factors can be determined.
In this project we plan to use MR analysis, whereby genetic variants robustly associated with the risk factors above are used as instrumental variables (IV) to examine whether they have a causal effect on NDDs (categorical disorders and dimensional traits). We will use two-sample MR in which the IV-risk factor and IV-outcome associations are obtained from non-overlapping samples (Burgess et al., 2015). First, published GWAS studies will be used to identify genetic variants robustly associated with the risk factors. Second, these genetic variants will be used to calculate a genetic score for each risk factor in an independent target sample (ALSPAC). Standard linear and logistic regression models will be used to estimate the effect of each risk factor on the NDD trait of interest in the ALSPAC target sample, using the genetic scores as an instrument.
We will also employ additional methods such as positive and negative control designs to strengthen causal inference (Lawlor, Tilling & Davey Smith, 2017).
References
Burgess S, Scott RA, Timpson NJ, Davey Smith G, Thompson SG, Consortium E-I (2015). Using published data in Mendelian randomization: a blueprint for efficient identification of causal risk factors. European Journal of Epidemiology 30, 543–552.
Lawlor DA, Tilling K, Davey Smith G (2017). Triangulation in aetiological epidemiology. International journal of epidemiology. [Epub ahead of print]
B2841 - The role of X chromosome polymorphisms in cardiovascular disease - 15/02/2017
We are aiming to identify the role of X chromosome on cardiovascular diseases in ALSPAC (including presence of disease, blood pressure, anthropometric traits including BMI, lipid levels and glycemic traits). X chromosome association analysis will be conducted using ALSPAC genotype data. The Variance explained by the X chromosome will be estimated.
B2836 - Replication of methylation biomarkers predicting health effects of adolescent cannabis use - 31/05/2017
Cannabis is the most commonly used illicit drug with particularly high rates of use among young people. The question of whether cannabis is harmful remains the subject of heated debate. The rapidly changing attitudes towards the legalization of cannabis for medical and recreational purposes add urgency to the need for scientific answers. Adolescence is of particular concern because use in this period has been associated with altered brain development, long-term health effects, and dramatically higher odds for meeting DSM-IV criteria for cannabis use dependence.
Two particular factors limit inferences from current research on the health effects of adolescent cannabis use. First, as most findings involve cross-sectional studies, it is unclear whether reported associations reflect the effect of cannabis or preexisting differences between users and nonusers. Thus, we need prospective, longitudinal studies that begin in adolescence and continue into adulthood, and where cannabis use data has been collected before and after initiation. Second, current markers for cannabis exposure in peripheral tissues only indicate whether it has recently been used. Instead, there is a need for biomarkers that reflect its biological impact and can predict the risk for cannabis dependence and negative health outcomes. Methylation marks are ideal for this purpose as they involve the stable methyl-cytosine bond that can be measured cost-effectively in easy to collect genomic (histone-free) DNA.
To better understand cannabis use and its health effects, we propose the use of already collected samples from the Great Smoky Mountains Study (GSMS). The GSMS started 25 years ago with children aged 9 to 13 and is still ongoing. Both cannabis use information and blood samples were obtained at two-year intervals for the same subjects. Using data and blood samples from before and after initiation, this allows us to control for preexisting differences between user groups and link cannabis induced biological changes to health outcomes later in life. To develop new biomarkers, we will first assay the methylation status of all 28 million common CpGs and study the impact of regular cannabis use on the methylome. Next, we will use the methylation data to predict cannabis use trajectories as well as effects of cannabis on short and long-term health outcomes. The most promising methylation sites will be followed up using a targeted assay in samples from the Avon Longitudinal Study of Children and Parents (ALSPAC).
Successful completion of this research will yield replicable methylation signatures of regular cannabis use as well as biomarkers that predict risk of dependence and health outcomes. Our results will inform public health policies and become part of algorithms that can be used to improve prognosis, diagnosis, and treatment.
B2833 - Assessing the impact of parental smoking on DNA methylation in offspring sex chromosomes - 17/05/2017
Tobacco smoke has been shown to cause highly reproducible changes to the methylome. This has been observed in response to own smoking but also in offspring exposed to maternal smoking in utero. Sustained maternal smoking during pregnancy is associated with aberrant DNA methylation reported in large-scale epigenome-wide association studies (EWAS) of cord blood (1,2). Associations are also seen with paternal smoking, although these largely attenuate when adjusted for maternal smoking (explained by the correlation of maternal and paternal smoking habits). However, all the EWAS for prenatal smoking exposure performed in cord blood to date have focused on autosomes and sex chromosomes have been previously excluded from the analysis. We propose that methylation changes induced in sex chromosomes may have biological importance and we seek to specifically analyse these in the Accessible Resource for Integrated Epigenomic Studies (ARIES).
We hypothesise that paternal and maternal exposure to cigarette smoke may lead to DNA methylation variation in the offspring sex chromosomes and these aberrations may increase the susceptibility of exposed offspring to adverse perinatal outcomes.
References:
1. Joubert BR, Felix JF, Yousefi P, Bakulski KM, Just AC, Breton C, et al. DNA Methylation in Newborns and Maternal Smoking in Pregnancy: Genome-wide Consortium Meta-analysis. Am J Hum Genet 2016;98(4):680-96.
2. Richmond RC, Simpkin AJ, Woodward G, Gaunt TR, Lyttleton O, McArdle WL, et al. Prenatal exposure to maternal smoking and offspring DNA methylation across the lifecourse: findings from the Avon Longitudinal Study of Parents and Children (ALSPAC). Hum Mol Genet 2015;24(8):2201-17.
B2834 - Understanding the Relationship between Adolescent Biopsychological Development and their Behaviour in the School Context - 19/04/2017
The inclusion and achievement of boys in the school setting is of significant concern, especially for those whose challenging behaviour is so severe that it disrupts the learning and wellbeing of others. With a reduction in specialist places for boys with behavioural, emotional and social difficulties (BESD), schools are expected to use devolved funding to establish support mechanisms ‘in-house’. If this includes exclusion to a behavioural unit, the socio-economic outcomes for individuals is often dire involving educational underachievement, youth unemployment, crime and substance dependence. My proposed study aims to explore factors associated with the challenging behaviour of boys with BESD in the school setting with the aim of informing possible interventions and strategies to positively support their behaviour and inclusion. These include biological factors associated with puberty and psychological factors such as social skills and cognition.
B2832 - inclusion of indoor tanning and sun exposure questions in the 2017 ALSPAC YP questionnaire - 01/06/2017
Ultraviolet radiation (UVR) is the most important risk factor for skin cancer. Indoor tanning, defined as the use of an ultraviolet emission device to produce a cosmetic tan1, has been associated with increased risk of melanoma and non-melanoma skin cancer (NMSC), and thus has been classified as a group I carcinogen by the International Agency for Research on Cancer2. Despite the risk posed by this activity, indoor tanning is common practice among young people in developed countries. A systematic review and meta-analysis of 12 studies of indoor tanning and NMSC showed that ever exposure to indoor tanning was associated with a higher risk of both, squamous cell carcinoma and basal cell carcinoma, and that exposure at a young age (< 25 years of age) increased these risks considerably1. Since indoor tanning is a potentially modifiable exposure to UVR it would be relevant to examine its frequency and the characteristics of its users in the ALSPAC cohort. For the most part ALSPAC has not included questions regarding indoor tanning. The exceptions are the mother’s ‘Your environment’ questionnaire administered in early gestation asking how often they had used a sun bed or lamp during their pregnancy, and the child-based KN questionnaire at 69 months old asking about ever use of sun bed or lamp and its frequency. On the other hand, ALSPAC children have been assessed with respect to natural sunlight exposure at regular intervals, although only up to the age of 12 years.
2515 - Genes and prenatal environment as risks for aggression and conduct problems in childhood and adolescence
Both genetic and environmental factors play a role in the etiology of aggression and conduct problems. However, it is unclear which and to what extent genes contribute to aggressive traits and what the relative contribution is of the environment and possible interactions between genetic makeup and environmental exposure. Also the neural and molecular pathways which underlie the aforementioned effects are still unclear.
Therefore, our goals are to identify genes that contribute to the onset and course of aggresion and conduct problems, to assess the effect of the pre- and perinatal environment on the onset and course of aggression and conduct problems and to identify gene-environment interactions between susceptibility genes on one hand, and pre- and perinatal environmental events on the other hand.
B2766 - Does the interruption of the maternal microbiota exposure through cesarean birthing contribute to the development of obesity in - 03/05/2017
Early interaction between newborn babies and microbes from the mother is essential for healthy immune development. It has been reported that the way in which the baby is born can result in differences in the composition of the microbes that establish themselves in new-borns (Dominguez-Bello et al., 2010; Goedert, 2014). For example, the rate of caesarean (C-section) delivery is increasing worldwide and epidemiological studies report an association between C-section delivery and an increased risk of obesity, asthma, allergies and immune deficiencies (Thavagnanam , 2008; Mueller, 2014; Pistiner, 2008; Round and Mazmanian, 2009; Li, 2013). These findings have led to investigations into how caesarean-born babies respond to the missing vaginal microbiota being replaced artificially (Dominguez-Bello, 2016). We want to study if there is a direct relationship between delivery type (c-section or birth canal) and obesity in childhood. We are especially interested in families with siblings born via both types of delivery as this data could be more conclusive.
B2831 - GWAS of selected metabolic traits - 02/02/2017
To better understand the causal role of lipoproteins and lipid components in cardiovascular and metabolic disease.
B2823 - A GWAS of childs ability to cope as measured by SDQ - 27/04/2017
I will perform a genome wide association study in which I hope to identify variants within the genome that may confer 'resilience', as measured by a strengths and difficulties questionnaire administered at age 11. This may identify genes which also confer an ability to cope with adverse life events, illness and birth defects such as cleft lip and palate. This will ultimately be useful for identifying those individuals who may need more interventions/close monitoring during adverse situations.
B2769 - Association of dietary factors with cardiometabolic health Possible mediating role of DNA methylation and metabolome - 03/04/2017
Cardiometabolic disease (CMD) is a major public health problem. It is well known that CMD is caused by interactions between environmental and genetic factors. Additionally, recent studies on mechanism of CMDs have demonstrated that changes in molecular intermediates (e.g. levels of metabolites and DNA methylation) affect prevalence of CMDs. However, there has been limited evidence to suggest causal effect of dietary factors on CMDs, mediated by molecular intermediates. The aim of current study is to estimate relationship between dietary factors and cardiometabolic health, considering effect of molecular mediation including levels of metabolite and DNA methylation. This study can contribute to enhance an understanding of causal effect of dietary factors on CMDs and clarify the mechanism of diet-metabolome-genome-epigenome-health outcomes and contribute to prevent CMDs.