Proposal summaries
B3214 - GWAS of physical activity - 27/11/2018
B3212 - Gendered play in children with autism and their non-autistic peers - 20/11/2018
Research suggests that children who are exposed to high levels of testosterone in the womb may be more likely to develop autistic traits. Since testosterone also plays a role in sexual differentiation as a male sex hormone, it is though that such exposure may also result in these children having more masculine characteristics irrespective of whether they are biologically male or female. On the basis of this evidence, one might therefore expect that boys with autism would be more masculine than typically developing boys, whilst girls with autism would be less feminine: a prediction that has been referred to in the literature as the "extreme male brain" (EMB) theory of autism.
Despite the biological plausibility of EMB, the theory has found only partial support in research to date. Whilst there are studies which suggest that females with autism may be more masculine in certain respects than non-autistic females (consistent with EMB), other evidence suggests a pattern of gender identity defiance (GID), where autistic females are more masculine and autistic males more feminine than non-autistic controls (inconsistent with EMB).
Our study therefore aims to test these two competing models of gender identity in autism - EMB versus GID - by examining the gendered play behaviours of children with autism and that of their non-autistic peers on various occasions throughout childhood.
B3208 - Associations between childhood diet and subsequent puberty timing - 20/11/2018
Early timing of puberty has established wide relevance for the child & family (stress, mental health, behavioural issues, and risk-taking behaviours), their educational performance, and for public health (obesity, Type 2 diabetes, cardiovascular disease, and several types of cancer). Hence, understanding the determinants of puberty timing is an important topic. Children who show rapid weight gain during early life and are overweight or obese are more likely than others to progress through puberty early. However, there is scarce and inconsistent evidence regarding specific foods or nutrients associated with the timing of puberty (1).
A previous analysis of ALSPAC in 2010 (prior to available puberty questionnaire data) was limited to a categorical assessment of age at menarche only (2). That analysis found that higher total protein intakes at age 3 and 7 years were associated with higher likelihood of reaching menarche by age 12 years 8 months (2), but two other studies found no association between total protein intake and the timing of onset of puberty (1). Also, inconsistent associations between total fat, monounsaturated fat and polyunsaturated fat intakes and puberty timing have been reported (1, 2). No association between total carbohydrate intake and puberty timing was found (1), nor in ALSPAC with specific carbohydrates (i.e. starch, sugar and fibre intakes) (2). In contrast, a recent study found that more frequent sugar-sweetened beverage intakes was associated with earlier menarche (1).
The present research will analyse diets in children at ages prior to the onset of puberty. In ALSPAC, these diets were assessed by parental report (food frequency questionnaire and diet diaries) and objective biomarkers of specific intakes (red cell membrane fatty acids, as markers of dairy fat, and fish and seafood intakes). The main outcome will be the timing of puberty development: onset, completion and duration of puberty. Both boys and girls will be included, and analysed separately.
References:
1) Villamor, E., & Jansen, E. C. (2016). Nutritional determinants of the timing of puberty. Annual review of public health, 37, 33-46.
2) Rogers, I. S., Northstone, K., Dunger, D. B., Cooper, A. R., Ness, A. R., & Emmett, P. M. (2010). Diet throughout childhood and age at menarche in a contemporary cohort of British girls. Public health nutrition, 13(12), 2052-2063.
B3210 - Variably methylated regions in the newborn epigenome environmental genetic and combined influences - 20/11/2018
Fetal programming describes the process where environmental events during pregnancy, such as maternal smoking for instance, shape the development of the embryo. One possible mechanism is DNA methylation, where a methyl-group is added to a DNA molecule. Also common variation in the DNA itself can influence DNA methylation. In this project we aim to assess the impact of common DNA variation, prenatal environment, and their combined effects on DNA methylation in newborns.
B3209 - Effects of metabolome on puberty timing - 20/11/2018
B3207 - Genotyping of hypermobile Ehler-Danlos Syndrome EDS - 20/11/2018
Patients suffering with hypermobile Ehlers-Danlos Syndrome (hEDS) are frequently affected by structural gut malformations and functional bowel diseases. This affects their overall health and quality of life as symptoms progress. EDS represents a diverse group of hereditary disorders that affect function of the gluing substance (connective tissue) supporting different parts of body including blood vessels, bone, skin, gut and other organs. The genetic cause behind hEDS is yet not known. We aim to find clinical correlates and genetic markers of hEDS in affected individuals found in the large familial cohorts of Avalon Longitudinal Study of Parents and Children (ALSPAC) and Born in Bradford (BiB). Clinical data and genetic information of individuals matching diagnostic criteria of hEDS will be sought and their clinical symptoms and genetic signatures (variants) compared with other individuals with no symptoms. Through a quality control process only the highly probable variants will be prioritized and their role in disease characterized. This proof-of-concept will be tested in future at QMUL in families with hEDS patients in multiple generations. Availability of clinical and genetic screening will pave way to early diagnosis and more holistic treatment approaches to improve health and quality of life in these patients.
B3206 - INTERACTIVE PLAY A STRATEGY TO IMPROVE NURTURING CARE AND MOVEMENT BEHAVIOURS FOR INFANTS - 15/11/2018
My hypothesis is that interactive play between caregivers and their infants could improve growth, development and wellbeing through nurturing care, and through improving movement.
The aim of interactive play is that it encompasses two key elements â a positive interaction between caregiver and infant, and promotion of healthy movement behaviours in the child. From my formative work, I have been able to explore and develop novel methodology for objectively measuring infant movement using 24-hour accelerometry, and have consequently been able to measure and interpret detailed physical activity over a seven-day period in this population. Caregiver-infant interactions have primarily been measured using questionnaires or third party observation; however, these measures are limited by their subjectivity and intrusiveness. First person observation using headcams provide more comprehensive measures of caregiver-infant interaction, and the analysis of these measures has been optimised by Dr Pearson (Bristol, UK). Even with these novel ways of assessing movement and caregiver-infant interaction, I still need to determine relationships between these two behaviours, as well as optimal levels of interactive play. This project proposes to add accelerometry to a subsample of the ALSPAC-G2 cohort, in which headcams are already being used. This will be replicated by the cohort I am establishing in South Africa in order to allow for cross-context comparisons.
B3205 - Impact of Maternal and Early Childhood diet on obesity and associated outcomes - 08/11/2018
Given the rising prevealnce of obesity and related chronic diseases at increasingly younger ages, we will be using the AVON data to examine the association between the intake of added sugar (particularly sugar sweetened beverages) in the diet in pregnancy and early childhood and the outcomes of child obesity and cardiometabolic outcomes, including non-alcoholic fatty liver disease.
B3203 - A hypothesis-free approach to identify DNA sequences regulating geneenvironment interaction GxE in programming adult response - 08/11/2018
Understanding how genetic variations interact with an environmental exposure (GxE) is a critical step in predicting long-term health. For example, genetic differences between individuals influence the likelihood to develop adult mental health disorders triggered by adversity in early-life. The development of such disorders is hypothesized to be linked to environmentally-induced epigenetic modifica-tions, such as DNA methylation, at regulatory regions of genes linked to adult stress responses. DNA variations (polymorphisms) between individuals at these key regions could determine those sensitive to developing long-term effects following early-life adversity. However, it is difficult to identify these key regulatory regions in humans as we are all uniquely individual both genetically and environmentally.
We will develop and test a strategy to discover polymorphisms regulating GxE using a translational mouse model to control for genetic variation under a regulated environment together with an integrated genetic and epigenetic genome-wide approach. As proof of principle we will perform association studies with polymorphisms and DNA methylation at homologous regions in the longitudinal ALSPAC study of early environmental outcomes.
B3204 - Investigating ancestry of ALSPAC - 08/11/2018
Population stratification and ancestry variation can lead to spurious allelic associations in genetic studies. The common approach to control for population stratification in analysis is to include a series of principal components created from genotype data as covariates. Recent studies (Haworth et al, 2018) have highlighted that this approach may not be suitable as a method of control, particularly for regional studies such as ALSPAC.
Haworth, S. et al. Common genetic variants and health outcomes appear geographically structured in the UK Biobank sample: Old concerns returning and their implications. bioRxiv (2018).
B3202 - Protective and Resiliency Factors for wellbeing after Preterm Birth A Multi-Cohort Study - 06/11/2018
The number of preterm born children, defined as birth before the completed 37th week of gestation, has increased globally, with currently around 10% of all children worldwide being born preterm. Improvement in the management of risk pregnancies and neonatal care procedures in the last four decades have increased survival rates of all preterm born neonates and particularly those born very preterm. However, preterm birth has been linked to many long-term sequels related to cognitive function and mental health which are associated with gestational age at birth. Negative consequences are more likely among those born very preterm (<32nd week gestation), compared to moderate preterm (32nd-33rd weeks gestation) and late preterm children (34th-36th weeks gestation) but the latter two groups have less frequently been studied. In this project we study positive and negative aspects of wellbeing in preterm children, adolescents, and young adults and the role of protective factors for wellbeing potentially leading to resilience. Positive wellbeing involves high self-esteem and mental wellbeing, while negative wellbeing is defined by emotional and behavioural problems. We are studying protective factors on the individual level (academic skills, personality factors) and micro-system factors (family climate, parental mental health, peer relations). To answer these questions we analyse simultaneously data from six cohort studies (ALSPAC, British Cohort Study, Bavarian Longitudinal Study, Basel Study of Preterm Children, Millennium Cohort Study, and National Child Development Study) from UK, Germany, and Switzerland. Comparisons between the cohorts allow investigating differences between countries and epochs with different neonatal care procedures.
B3201 - Phenome-wide Mendelian randomization study mapping the influence of the plasma proteome on complex diseases - 01/11/2018
The human proteome is the major source of therapeutic targets and, as such, understanding the causal consequences of varying protein levels has the capacity to identify new target-indication pairs and additional or alternative indications for existing therapeutics. Recent advances in protein measurement have enabled large-scale genome-wide investigations of components of the human plasma proteome. Here, we employed two-sample Mendelian randomization (MR) to evaluate the influence of 968 genetically-influenced plasma protein levels on 153 diseases and 72 quantitative risk factors from MR-Base.
B3200 - Establishing value of transactional data in LPS - 08/11/2018
The Wellcome Trust Longitudinal Population Studies (LPS) Strategy encourages integration of data from a variety of resources, including commercial data on shopping habits; and states that research methods are needed to underpin efficient linkages of multiple datasets. Our project addresses this by building on core Avon Longitudinal Study of Parents and Children transactional data linkage program, seeking to develop a methodology for efficient integration of transactional data into LPS research.
This 14 months project will create a methodology, a software package, guidelines and three proof-of-concept studies to the use of linked transactional data in LPS. The guidelines will include the description of the full cycle of data linkage from workshops and surveys with participants about feasibly and acceptability of such data linkage, through consent campaigns, data linkage and a framework of working with linked dataset. As a part of the project we will create a software package that can integrate the data into LPS and make it usable for LPS researchers. Further, we will run exploratory and dissemination workshops with LPS researchers to first investigate utility of data linkage and second provide them with the tools to set up transactional data linkages and conduct research with transactional data. The framework of using linked transactional data with LPS developed in this research project can be rolled out to be used in other cohort studies (e.g., through Cohort and Longitudinal Studies Enhancement Resources, CLOSER), making possible a harmonised longitudinal population studies approach for studying public health with transactional data.
B2849 - Perinatal CMV Infection and Childrens Cognitive Development - 14/11/2018
B3199 - SCaRLeT Sex differences in Cardiovascular Risk across Life course Transitions - 30/10/2018
B3198 - Prospective associations of worry and anxiety disorders with anorexia nervosa - 30/10/2018
The project will examine the longitudinal associations of worry and anxiety disorders with anorexia nervosa (AN), and seeks to address which of worry and anxiety disorders is most important in explaining later AN development. The project will supplement analyses completed in another sample, with a view to informing theories of AN development and prevention interventions.
B3196 - Exploring associations between childhood RAP adolescent eating disorders - 23/10/2018
Childhood recurrent abdominal pain (RAP) is very common, affecting around 10% of children, and highly co-morbid with anxiety. The link between anxiety and eating disorders is well established, and clinically I have noticed that many adolescents with eating disorders suffered from RAP in childhood. A theory underpinning childhood RAP is that children develop a fear of normal somatic gut sensations, and similarly one of the core features of eating disorders, such as anorexia nervosa and bulimia, is a fear of somatic sensations. I would like to analyse the ALSPAC dataset to assess whether childhood RAP predicts later eating disorder cognitions and behaviours.
B3195 - GWA META-ANALYSIS ON ASTHMA PLUS ECZEMA PHENOTYPES - INTERACTION WITH EARLY TOBACCO SMOKING EXPOSURE - 18/10/2018
There are an increasing number of studies on the broad phenotype of allergic disease where individuals suffer from asthma, eczema or hay fever, presenting with at least one of these diseases. This study aims to identify genetic markers for individuals with both asthma and eczema and investigate how early exposure to tobacco smoke affects this phenotype.
B3194 - Sample based recall by genotype analysis of the impact of variation in BMI on Metabolon derived MS metabolite profile - 11/10/2018
It is highly likely that there is a broad and reproducible footprint of variation in body composition (lean and fat mass) on the circulating metabolome. Technological developments are now such to allow a broad characterisation of circulating metabolome using an approach called mass spectrometry which can allow for an analysis of the cell derived products of metabolic processes by exposures of interest. Here the exposure of interest is body mass index (BMI) - or weight given height.
The problem with looking at the direct relationship between BMI and measures of the metabolome is that BMI is related to many other biological and non-biological things. Therefore, when one analyses the relationship between BMI measured directly and health outcomes (like metabolites), then it is the case that BMI and those other things are jointly assessed as they are correlated. To avoid this, it is possible to conduct randomised controlled trials which shuffle up these correlations before assessing the impact of a risk factor - however you cannot randomise to BMI. Therefore, by taking genetically predicted BMI, it is possible to avoid this problem and to assess the impact of BMI variation on metabolite measures in ALSPAC.
We will do this by using the ALSPAC genetic data to generate a score for the burden of genetic contributions to higher and lower BMI, then select samples from storage for metabolite measurement at a company called Metabolon.
The main analysis of the data generated by this experiment will be focused on characterising the impact of BMI on the human metabolome. In principle, the two groups generated in this sample (high and low BMI as prescribed by being at the ends of a distribution of BMI genetic risk) will be compared.
B3193 - Polygenic risk score analyses of adult psychopathology and childhood internalizing ADHD and social problems - 09/10/2018
Several longitudinal cohort-based studies have shown that the onset of various psychiatric disorders in adulthood are often preceded by psychiatric symptoms and disorders in childhood and adolescence (Kessler et al., 2007, Rao and Chen, 2009). Similarly, childhood psychopathology has been found to be associated with physical traits including BMI, as well as adversely affecting cognitive traits like IQ and educational attainment (Pine et al., 2001, Singh et al., 2013, Costello and Maughan, 2015). These individuals typically go on to have less favorable outcomes in areas of adult functioning related to health, SES and social relationships/isolation (Copeland et al., 2015, Costello and Maughan, 2015).
The goal of this project is to carry out large-scale analyses of the genetic overlap between adult psychiatric disorders and related traits, and childhood and adolescent psychiatric phenotypes. To achieve this, this study will use available GWAS summary statistics data on adult psychiatric disorders and related traits to construct polygenic risk scores (PRS), as well as phenotype data on childhood internalizing behaviour, ADHD/Attention Problems and Social Problems from multiple suitable cohorts. Specifically, we will test the ability of the PRS to predict childhood and adolescent psychopathology in a regression model that tests the association between each polygenic score and each trait at different ages, thus allowing us to test for differences in the associations between different PRS and childhood psychopathology across cohorts, outcomes and age.
Summary results will be transferred to the analytical team in Amsterdam who will meta-analyse the ALSPAC data along with several other cohorts from the CAPICE consortium.