Proposal summaries
B2476 - Genetics of common childhood infectious diseases - 02/07/2015
Genetic variation at the FUT2 locus on chromosome 19 (secretor/non secretor) predisposes to at least two infectious diseases. Being a secretor leads to genetic immunity to gastroenteritis in adults caused by infection by the Norwalk norovirus and fucosylated oligosaccharides in the breastmilk of secretors are protective against gastroenteritis children. Using genotype data I will examine whether protective effects of maternal secrector status are present for breastfed children.
2474 - GWAS total problem score
Meta-analysis of total child/adolescent behaviour and emotional (combined) problem score, later followed by a meta-analyses of general psychopathology factor.
B2472 - Uncommon and rare genetic variants associated with vitamin D levels - 25/06/2015
GWAS has sucsessfuly identified common candidate loci associated with vitamin D levels. However, these loci account for only a small proportion of heritability in vitamin D levels. These studies did not assess for uncommon or rare variants. Access to whole genome sequencing data and deeper imputation based on the UK10K/1000G panel means that it is now possible to test a greater range of uncommon and rare variants. This approach has been previously used to re-evaluate existing phenotypes and has lead to new variants being discovered, e.g. for triglyceride and thyroid hormone levels. The consortium consists of the following European ancestry cohorts:
1. Twins UK
2. ALSPAC
3. Framingham Heart Study
4. Rotterdam Study
5. SOF
The analysis for the ALSPAC cohort will be conducted by Tom Dudding and Simon Haworth both IEU members, under Nic Timpson's supervision.
Aims. The IEU has been approached by an international consortium to participate in analysis. The overall consortium aims are to identify uncommon and rare genetic variants associated with vitamin D levels.
B2471 - Diet and Myopia - 25/06/2015
A) Relationship between glycemic index, dietary protein and myopia.
The Cordain theory [3] proposes that myopia occurs as a result of environmental conditions associated with modern civilisation, which came about after the Palaeolithic era. The prevalence of myopia is very low in hunter-gatherer populations compared to more "advanced" populations (less than 2% vs. greater than 20%) [1]. In Eskimos, increasing acculturation during the 1960's led to a marked increase in myopia prevalence [2]. The typical Palaeolithic diet is characterised as being high in protein, low in fat and low in carbohydrates, particularly low glycaemic index carbohydrates: which are slowly absorbed in the blood stream and produce a gradual and minimal rise in plasma glucose and insulin levels when compared to higher glycaemic foods . As well as being implicated in metabolic syndrome, the modern - lower protein/higher glycaemic index - diet has also been suggested as a potential risk factor for myopia [3].
Dietary protein has also been considered as a possible risk factor for myopia, because protein generally results in lower rises in both plasma glucose and insulin when compared to carbohydrate.
In a number of studies, Gardiner [4,5], indicated that myopic individuals consumed significantly lower amounts of animal protein than non-myopes. Further, in an intervention study (albeit a non-rigorous one) he was able to show that increasing the level of animal protein in the diets of myopic children slowed progression of their myopia when compared to a control group receiving no dietary modification [6].
B) Exploratory analysis: Dietary copper
Normal copper metabolism is essential to ocular tissue health and is associated with myopic refractive error development in some studies [7,8]. A recent study found that mutations in the SCO2 gene were associated with autosomal-dominant high-grade myopia. SCO2 encodes for a copper homeostasis protein influential in mitochondrial cytochrome c oxidase activity. Mutations of SCO2 were associated with a destabilisation of protein structures which in turn may result in modulation of oxidative toxicity-particularly in the retina, leading to retinal neuronal thinning. In addition, mutations can affect copper metabolism, which may result in an imbalance of copper enzymatic support activity and oxidative levels within eye tissues [9]. Proper copper metabolism is essential for cell differentiation, development, and maintenance. One study demonstrated the protective effect of copper supplements in individuals with myopia, restoration by capsule injection of copper compounds resulted in increased scleral copper concentration and improved scleral tissue elasticity with cessation of myopic refractive error development [10].
C) Exploratory analysis: Breastfeeding
Observational studies have suggested that breast-feeding benefits the visual development of infants, which has been attributed to the presence of DHA in breast milk but not most formula milks.
In a cross-sectional study of 797 children (ages 10-12 years) in Singapore, the prevalence of myopia was significantly lower in children who had been breastfed than in those who had not (62% vs. 69.1%; p=0.04). The duration of breastfeeding (three months or less versus more than three months) was not associated with myopia risk. However, since the incidence of myopia in children in Singapore is among the highest in the world, it is not clear whether these findings can be generalised to other populations [11].
Analyses of data from three large British birth cohorts showed that there were no differences in visual outcome in childhood or adolescence among those initially breastfed for greater than 1 mo compared with those formula fed. Rates of breastfeeding fell across successive cohorts considerably, but there was no evidence of a subsequent increase in adverse visual outcome in childhood, although, there was a small increase in adverse visual outcome in adolescence from 1946 to 1970. However, the latter did not take into consideration important confounding factors, especially the age at which vision was assessed. (12)
B2470 - Metabalomic profile of vitamin D deficiency - 25/06/2015
Aims:
1) To assess the how serum vitamin D concentration affects metabalomic profile
2) To identify a genetic instrument for metabolites that are associated with vitamin deficiency
B2469 - Sexual Health Need in Avon - informing the Joint Strategic Needs Assessment - 25/06/2015
Overall Aim:
To calculate prevalence estimates of a range of self-reported key sexual health indicators and behavioural patterns as assessed in the ALSPAC cohort between the ages of 17 and 22 years of age in order to better understand the sexual health needs of young people in the Bristol area.
B2457 - Locating the neighbourhood effect on cervical cancer diagnosis - 19/06/2015
Aims and Objectives, Context and Significance of the Research:
The aim of the project is to locate neighbourhood mechanisms through which the effects of area deprivation impact the likelihood to receive cervical cancer diagnosis. Variables will be chosen in line with the causal mechanisms suspected to explain the relationship which has often been explored as an outcome of individual over neighbourhood poverty, using a cross-sectional methodology (Singh et al., 2004), adopting traditional approaches and thereby reporting statistical not causal inference. In adopting a methodology which seeks to make use of neighbourhood histories, as well as employing a mechanisms based approach, the research will directly acknowledge and respond to gaps within existing neighbourhood effects literature, as well as articulating a more rigorous and fine-grained analysis, resulting in effective neighbourhood interventions.
B2465 - An analysis of the environments which promote the development of early speech and language skills - 18/06/2015
AIM:
This aim of this research proposal is to understand the impact that children's early physical and communication environments have on their developing speech and language skills. The findings will be of use to parents, health visitors, health promotion and public health, early years practitioners and educationalists with regard to which environments and behaviours are most helpful in promoting early speech and language development and which can have a deleterious effect. This is particularly important given recent changes in society which mean that children are being brought up in homes where there are numerous devices which can be used to occupy them rather than engage them in conversation. Moreover, other lifestyle factors could also be having an impact but to date have been subject to minimal investigation (e.g. central heating, forward facing buggies, eating together). Whilst there is much evidence on the importance of parent child interaction on the development of speech and language in young children, there has not been the opportunity to date to investigate how this interacts with these other factors relating to the physical environment.
The findings of this study will also be of interest to the government. A recent DfE report based on data from the original ALSPAC sample (Roulstone, Law, Rush, Clegg, Peters, 2011, DFE RR134) found that vocabulary scores at age 2 years old were associated with baseline scores on entry to primary school, which are themselves related to academic outcomes later on. Low academic outcomes and persistent speech and language impairment are both associated with poor social and economic outcomes and a greater cost to the nation. This study will aim to identify factors early on in the child's development, including data collected in the child's home, which could impact on vocabulary at age 2 and language skills and academic skills beyond.
In the course of collecting data on variables which impact on early speech and language development, normative data will be collected using tools which have been developed in the US and for which UK norms are not currently available. These data will be of help to health visitors and early years practitioners in the future as they will assist in the process of early identification of children at risk of speech and language impairment. Currently, children are not typically identified until age 2 at the earliest.
B2466 - Genetic and epigenetic influences on Research Domain Criteria Domains influencing risk for psychiatric disorders - 11/06/2015
Aims
To unravel the genetic and longitudinal epigenetic and environmental influences on National Institute of Mental Health (USA) Research Domain Criteria (RDoCs) Domains (http://www.nimh.nih.gov/research-priorities/rdoc/index.shtml) including: positive and negative valence and social process systems that contribute to the development of psychiatric disorders in children and young adults. In doing so, we will focus on the RDoCs Domains that have not been extensively studied in relation to genetic and epigenetic influences such as reward prediction error.
B2464 - The genetic landscape of speech language and communication skills - 11/06/2015
We would like to use the extensive ALSPAC resource to carry out investigations on common genetic influences and genetic overlaps between speech, language and communication related during childhood. These analyses will inform subsequent meta-GWAS within the framework of the GenLang Consortium
B2463 - Causal role of NMR metabolites in reading and spelling measures - 11/06/2015
Lipids in general and fatty acids in particular have been implicated in brain development (Simopoulos 2011, Molecular Neurobiology), cognitive ability (Swanson 2012, Advances in Nutrition), and dementia (Reitz 2011, Nature Reviews Neurology). Specific fatty acids, such as DHA, are believed to have a direct effect on cell integrity, development, maintenance, and function in the brain (Bazan 2011, Annual Review of Nutrition). These essential polyunsaturated fatty acids can only be obtained through diet with high levels found in cold water fatty fish, seed oils and green-leafed plants.
Spelling and reading are markers of learning ability and cognitive function (Taylor 2013, Psychological Bulletin). As both diet and learning ability are strongly influenced by socioeconomic level we will use a Mendelian randomisation approach to estimate the causal effects of lipid metabolites and fatty acids on brain function, in children aged seven, as this is measured through spelling and reading tests. For this we will use the identified polymorphisms affecting the metabolites of interest as reported in Ketunnen et al 2012 Nat Genet.
Depending on the results of this effort we will try to obtain funding for a more detailed characterisation of fatty acids in order to gain a better understanding of the mechanisms involved
B2462 - Collection of new non-cognitive skill measures in ALSPAC via questionaire - 11/06/2015
During this project we will study the development of non-cognitive skills across the life-course. Non-cognitive skills encompass a diverse range of skills including: motivation, perseverance, emotional intelligence, resilience, and self-regulation. We will investigate the genetic architecture of these skills, and particularly how these skills develop over time. ALSPAC has existing measures of non-cognitive skills measured repeatedly across childhood. Further measures are being collected in the Focus @24/25 YP clinic as part of Marcus Munafo's research. During this project we would like to collect further measures of non-cognitive skills via a questionnaire during 2016 or 2017. We will collect comparable measures to other major cohort studies, including the English Longitudinal Study of Aging and The Health and Retirement Study in the US, which will enable the data to be used in a large GWAS consortia. As part of the project comparable data will be collected in TEDS.
B2460 - Using linked routine and bespoke data to better understand inequity in the use of health care services among children - 11/06/2015
Using linked routine and bespoke data to better understand inequity in the use of health care services among children.
B2461 - Age at menarche and lung function A Mendelian randomisation analysis - 04/06/2015
We will perform a MR study to estimate the effect of age at menarche on parameters of lung function indicative of both restriction (FVC) and obstruction (FEV1/FVC). For this we would like to use ALSPAC lung function data from 16-year old women.
B2458 - Exploring associations between childhood pet ownership GCSE results hyperactivity anxiety and depression at age 15-16 - 04/06/2015
Aims
The aims of this study are to quantify the effect of pet ownership (all pets and individual species will be considered separately) during childhood (whilst controlling for confounders) on the following measures at age 15-16 years: GCSE results, Hyperactivity, Anxiety, Depression.
B2454 - An EWAS of Anti-Mullerian Hormone - 04/06/2015
The aim of this study is to identify differential methylation in cord blood that is associated with AMH levels in female and male adolescents (separately) 15 years of age.
B2453 - NutriCog Use of ALSPAC data to identify dietary factors associated with cognitive functioning - 04/06/2015
The overall objective of our research is to identify dietary components associated with better health and quality of life. For this project in particular, we focus on the relationship of foodgroups, foods, and nutrients and cognitive performance. ALSPAC is a rich source of diet and nutrition data throughout childhood and there is already existing evidence that food intake patterns in early childhood are associated with children's IQ. We wish to extend upon the existing research to investigate how nutrient and food intakes (including dietary patterns) throughout childhood but particularly in the early school years relate to more specific measures of children's cognition (atttentional control and other executive functions), to overall school performance and to parents' ratings of child behavior. The findings from this study will be used to inform the design of nutrition-based interventions in school children in the two other participating countries (Germany and Spain).
B2432 - Genome-wide association analysis of 2D4D finger ratio - 30/05/2015
Genome-wide association analysis of 2D:4D finger ratio
B2452 - Signature pathways of early life nutritional environment - 21/05/2015
This proposed project aims to:
1. Identify CNS and blood signature pathways altered by early life high-fat/high-sugar diet exposure in mice.
2. Assess whether these signature pathways identify individuals at risk of adult metabolic or cardiovascular disease in human cohort data.
B2450 - Building a longitudinal picture of early life adversity and life course health - 21/05/2015
This is a five year fellowship which aims to assess the importance of early life adversity for health at different points in the life course using good quality, prospective data from Great Britain and Sweden.
AIM - the aim of the research is to assess whether early life adversity is associated with biomarkers of stress in childhood amongst children in Great Britain.